RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 GLS2Q9UI32 602 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF860A6NHJ4 632 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 KRBOX1C9JBD0 128 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 MAGEB4O15481 346 aaPredicted RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 TOXO94900 526 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 ZFPL1O95159 310 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 HIST1H2ABP04908 130 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 CDK2P24941 298 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 SSBP1Q04837 148 aaKnown RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 ALKBH1Q13686 389 aaKnown RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 CBFBQ13951 182 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 MTFR2Q6P444 385 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 HIST3H2AQ7L7L0 130 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF595Q8IYB9 648 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 DND1Q8IYX4 353 aaKnown RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF433Q8N7K0 673 aaPredicted RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF614Q8N883 585 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 BAHD1Q8TBE0 780 aaPredicted RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 SCARB1Q8WTV0 552 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 HIST1H2ACQ93077 130 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 WDR92Q96MX6 357 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 NMNAT3Q96T66 252 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 MRPL15Q9P015 296 aaKnown RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 KLK11Q9UBX7 282 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 MRPS2Q9Y399 296 aaKnown RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 XIRP2A4UGR9 3374 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 BLACEA4D250 179 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 SYNDIG1LA6NDD5 238 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 OR6C68A6NDL8 312 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 H7C417 338 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 TNFRSF10CO14798 259 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 RP2O75695 350 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 SCO1O75880 301 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 APBB3O95704 486 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 CSF1P09603 554 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 PPP3CBP16298 524 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 S100A11P31949 105 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 PTGS2P35354 604 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 NANOS3P60323 173 aaKnown RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 RAB30Q15771 203 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 NDUFAF6Q330K2 333 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 RGS7BPQ6MZT1 257 aaPredicted RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 ZC3H14Q6PJT7 736 aaKnown RBP12.54□□□□□ -0.4
VPS33A-208ENST00000543633 OR6K6Q8NGW6 343 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 MOSPD2Q8NHP6 518 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF417Q8TAU3 575 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 PNPLA2Q96AD5 504 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 ALG12Q9BV10 488 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 SFXN1Q9H9B4 322 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 CA10Q9NS85 328 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 SDHAF2Q9NX18 166 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 MTFP1Q9UDX5 166 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 ADAM18Q9Y3Q7 739 aa12.54□□□□□ -0.4
VPS33A-208ENST00000543633 PDE4DIPQ5VU43 2346 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 TRBV5-7A0A0A0MS05 114 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 TTLL8A6PVC2 850 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 C2orf74A8MZ97 194 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 XRCC3O43542 346 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 OR10H2O60403 315 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 AQP8O94778 261 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 HOXD4P09016 255 aaPredicted RBP12.53□□□□□ -0.4
VPS33A-208ENST00000543633 S1PR1P21453 382 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 TNFRSF4P43489 277 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 SEC61A1P61619 476 aaKnown RBP12.53□□□□□ -0.4
VPS33A-208ENST00000543633 CHMP1BQ7LBR1 199 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 SLC36A1Q7Z2H8 476 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 LRRTM1Q86UE6 522 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF227Q86WZ6 799 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 GLB1L2Q8IW92 636 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 EXD3Q8N9H8 876 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 OR51L1Q8NGJ5 315 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 OR5AK2Q8NH90 309 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 VSTM2LQ96N03 204 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 CHIAQ9BZP6 476 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 MSRAQ9UJ68 235 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 PRELID1Q9Y255 219 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 PCDHGA5Q9Y5G8 931 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 KCNMB2Q9Y691 235 aa12.53□□□□□ -0.4
VPS33A-208ENST00000543633 A0A0J9YY10 115 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 SUSD5O60279 629 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF254O75437 659 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 UPK3AO75631 287 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 ABHD16AO95870 558 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 TXNDC12O95881 172 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 IGKV1D-16P01601 117 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 NUP62P37198 522 aaPredicted RBP12.52□□□□□ -0.4
VPS33A-208ENST00000543633 ACTR1BP42025 376 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 ACTR1AP61163 376 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 TOMM20Q15388 145 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 EMC4Q5J8M3 183 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 TANGO2Q6ICL3 276 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 PRSS41Q7RTY9 318 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 JAZF1Q86VZ6 243 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 EIF4E3Q8N5X7 224 aaKnown RBP12.52□□□□□ -0.4
VPS33A-208ENST00000543633 C12orf76Q8N812 135 aaPredicted RBP12.52□□□□□ -0.4
VPS33A-208ENST00000543633 ZNRF4Q8WWF5 429 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 FAM3CQ92520 227 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 PIGKQ92643 395 aa12.52□□□□□ -0.4
VPS33A-208ENST00000543633 SMAD5Q99717 465 aaKnown RBP12.52□□□□□ -0.4
VPS33A-208ENST00000543633 MED11Q9P086 117 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms