RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 POMGNT2Q8NAT1 580 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 DEFB108BQ8NET1 73 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 OR5W2Q8NH69 310 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 MGARPQ8TDB4 240 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 GRK7Q8WTQ7 553 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 NRG4Q8WWG1 115 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 CCL17Q92583 94 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 CDS1Q92903 461 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 MARS2Q96GW9 593 aaKnown RBP4.04□□□□□ -1.76
LIMS1-214ENST00000542845 APIPQ96GX9 242 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 AMDHD1Q96NU7 426 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 ZNF385AQ96PM9 386 aaKnown RBP4.04□□□□□ -1.76
LIMS1-214ENST00000542845 DCLRE1CQ96SD1 692 aaKnown RBP4.04□□□□□ -1.76
LIMS1-214ENST00000542845 GPR22Q99680 433 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 RBBP8Q99708 897 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 BAG1Q99933 345 aaPredicted RBP4.04□□□□□ -1.76
LIMS1-214ENST00000542845 OR51B6Q9H340 312 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 OBP2BQ9NPH6 170 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 CTPS2Q9NRF8 586 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 TAAR3PQ9P1P4 343 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 NFU1Q9UMS0 254 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 SNX6Q9UNH7 406 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 CORO2BQ9UQ03 480 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 TEX264Q9Y6I9 313 aa4.04□□□□□ -1.76
LIMS1-214ENST00000542845 ARPC4-TTLL3A0A0A6YYG9 625 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 TRAV40A0A0B4J280 105 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 AGAP5A6NIR3 686 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SRRM5B3KS81 715 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 H0YL77 283 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 ZNF264O43296 627 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SCN2BO60939 215 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 UPK3AO75631 287 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 CLPXO76031 633 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 NDUFA7O95182 113 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 PSMG1O95456 288 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 PMS2P2O95744 297 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 CLPTM1O96005 669 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 IGLV1-44P01699 117 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 OPN1MWP04001 364 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 MYZAPP0CAP1 466 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 UBTFL6P0CB48 400 aaPredicted RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 OPN1MW2P0DN77 364 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 OPN1MW3P0DN78 364 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 UBL4AP11441 157 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 CD79AP11912 226 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 BCKDHAP12694 445 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 DDCP20711 480 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 EFNA1P20827 205 aaPredicted RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 IVDP26440 423 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SSTR1P30872 391 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SPRP35270 261 aaPredicted RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 ARR3P36575 388 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 HTR3AP46098 478 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 EVX1P49640 407 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SELENOPP49908 381 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SUMO3P55854 103 aaPredicted RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 ARL4CP56559 192 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 ROR2Q01974 943 aaKnown RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 DBPQ10586 325 aaPredicted RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 TRAF3Q13114 568 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 HNRNPA0Q13151 305 aaKnown RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SLC17A1Q14916 467 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 FAM83EQ2M2I3 478 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 TRMT5Q32P41 509 aaKnown RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 KLHL26Q53HC5 615 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SLC25A53Q5H9E4 307 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 TECRLQ5HYJ1 363 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 DMRTC1Q5HYR2 192 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 C1QTNF12Q5T7M4 302 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 RNF220Q5VTB9 566 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 TMEM225Q6GV28 225 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 NOXRED1Q6NXP6 359 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 NIPAL3Q6P499 406 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 ZNF620Q6ZNG0 422 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 LINGO2Q7L985 606 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 ZDHHC13Q8IUH4 622 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 LYG1Q8N1E2 194 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 ICA1LQ8NDH6 482 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 OR10S1Q8NGN2 331 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SNX33Q8WV41 574 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 TMEM234Q8WY98 164 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 CDKL2Q92772 493 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 CIDECQ96AQ7 238 aaPredicted RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 ALKBH3Q96Q83 286 aaPredicted RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 TSPAN32Q96QS1 320 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 FOXB1Q99853 325 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 BTBD2Q9BX70 525 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 NMUR2Q9GZQ4 415 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 HOXD1Q9GZZ0 328 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 TOR3AQ9H497 397 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 SERHL2Q9H4I8 314 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 ZNF385DQ9H6B1 395 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 BRF2Q9HAW0 419 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 LZTFL1Q9NQ48 299 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 HINT3Q9NQE9 182 aaKnown RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 TMEM181Q9P2C4 612 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 CRNNQ9UBG3 495 aaPredicted RBP4.03□□□□□ -1.76
LIMS1-214ENST00000542845 PCTPQ9UKL6 214 aa4.03□□□□□ -1.76
LIMS1-214ENST00000542845 ZNF346Q9UL40 294 aaKnown RBP4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms