RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 POGLUT1Q8NBL1 392 aa13.12□□□□□ -0.31
SFSWAP-210ENST00000541286 RHBDD1Q8TEB9 315 aa13.12□□□□□ -0.31
SFSWAP-210ENST00000541286 SCMH1Q96GD3 660 aa13.12□□□□□ -0.31
SFSWAP-210ENST00000541286 EMC7Q9NPA0 242 aa13.12□□□□□ -0.31
SFSWAP-210ENST00000541286 SIDT1Q9NXL6 827 aaKnown RBP13.12□□□□□ -0.31
SFSWAP-210ENST00000541286 IL20Q9NYY1 176 aa13.12□□□□□ -0.31
SFSWAP-210ENST00000541286 PRICKLE3O43900 615 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 TBX19O60806 448 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ATG12O94817 140 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 PPP1R3DO95685 299 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 HMGN1P05114 100 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 FPR3P25089 353 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 GRPRP30550 384 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 PITPNBP48739 271 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 MRPL2Q5T653 305 aaKnown RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 SLC23A3Q6PIS1 610 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 WDR88Q6ZMY6 472 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ZNF574Q6ZN55 896 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 MBOAT2Q6ZWT7 520 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 HDDC2Q7Z4H3 204 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 LRRC25Q8N386 305 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 OR2L8Q8NGY9 312 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 TRMT10AQ8TBZ6 339 aaKnown RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 THAP4Q8WY91 577 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 CNOT9Q92600 299 aaKnown RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 PTCHD1Q96NR3 888 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 MED18Q9BUE0 208 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 TRIM36Q9NQ86 728 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ZNF69Q9UC07 566 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ERVK-19Q9WJR5 959 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 SESN1Q9Y6P5 492 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 GMDSO60547 372 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ZGLP1P0C6A0 271 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 FCRL6Q6DN72 434 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 OR5M10Q6IEU7 315 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 CDK20Q8IZL9 346 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ARIH2OSQ8N7S6 290 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ZNF671Q8TAW3 534 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ZMYND19Q96E35 227 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 CALML5Q9NZT1 146 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 FAM171A2A8MVW0 826 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 HLA-DQB1P01920 261 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ERGP11308 486 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 F8A1P23610 371 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 CCL7P80098 99 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 SNTB2Q13425 540 aaKnown RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 CRMP1Q14194 572 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 GSG1Q2KHT4 349 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ELP2Q6IA86 826 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 MFSD12Q6NUT3 480 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 FBXO42Q6P3S6 717 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 PAQR7Q86WK9 346 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ZNF433Q8N7K0 673 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 OR5T3Q8NGG3 340 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 OR52B4Q8NGK2 314 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 KIAA1143Q96AT1 154 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 AHCYL2Q96HN2 611 aaKnown RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ZNF559Q9BR84 538 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 EDEM2Q9BV94 578 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 ZNF436Q9C0F3 470 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 MGAT4CQ9UBM8 478 aa13.11□□□□□ -0.31
SFSWAP-210ENST00000541286 FXYD6-FXYD2A0A087WZ82 144 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 ARPC4-TTLL3A0A0A6YYG9 625 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 SGK494L7N484 410 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 ZP3P21754 424 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 TRA2BP62995 288 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 TMEM255AQ5JRV8 349 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 VASNQ6EMK4 673 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 RANBP3LQ86VV4 465 aaPredicted RBP13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 OR4K14Q8NGD5 310 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 TMEM239Q8WW34 195 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 FGF11Q92914 225 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 ARHGDIGQ99819 225 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 CCDC3Q9BQI4 270 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 NDC1Q9BTX1 674 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 FXYD6Q9H0Q3 95 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 SUSD2Q9UGT4 822 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 LRRN3E7EW58 273 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 CDC123O75794 336 aaPredicted RBP13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 OR5F1O95221 314 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 HK1P19367 917 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 GDI2P50395 445 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 MLC1Q15049 377 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 OR1Q1Q15612 314 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 DECR1Q16698 335 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 SLC36A2Q495M3 483 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 SLC25A30Q5SVS4 291 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 RNLSQ5VYX0 342 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 TMEM64Q6YI46 380 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 MEPCEQ7L2J0 689 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 ASCL5Q7RTU5 278 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 RFLNBQ8N5W9 214 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 ZNF454Q8N9F8 522 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 FAM98AQ8NCA5 519 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 OR4K13Q8NH42 304 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 OR4C6Q8NH72 309 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 ARL6Q9H0F7 186 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 SEMA6CQ9H3T2 930 aa13.1□□□□□ -0.31
SFSWAP-210ENST00000541286 LRRN3Q9H3W5 708 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms