RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 STX3Q13277 289 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 SNTB2Q13425 540 aaKnown RBP11.71□□□□□ -0.53
SS18-204ENST00000539244 DAG1Q14118 895 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 TRIP10Q15642 601 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 FAM69AQ5T7M9 428 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 C5orf46Q6UWT4 87 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 ZNF627Q7L945 461 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 MDP1Q86V88 176 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 TMEM123Q8N131 208 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 GPR137CQ8N3F9 429 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 PIK3C3Q8NEB9 887 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 ZFAND2BQ8WV99 257 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 SLC25A36Q96CQ1 311 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 KTI12Q96EK9 354 aaPredicted RBP11.71□□□□□ -0.53
SS18-204ENST00000539244 TMEM19Q96HH6 336 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 CRLF2Q9HC73 371 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 BCL2L10Q9HD36 194 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 B3GNT2Q9NY97 397 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 SEC14L4Q9UDX3 406 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 USP22Q9UPT9 525 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 CMAHPQ9Y471 501 aa11.71□□□□□ -0.53
SS18-204ENST00000539244 B4DSR2 109 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 AIM2O14862 343 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 TRAF3IP2O43734 574 aaPredicted RBP11.7□□□□□ -0.54
SS18-204ENST00000539244 SYNGR3O43761 229 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 OR2T1O43869 369 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 ADRA2AP08913 450 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 GTF2E2P29084 291 aaKnown RBP11.7□□□□□ -0.54
SS18-204ENST00000539244 NPRL3Q12980 569 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 MPP2Q14168 576 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 KRT71Q3SY84 523 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 SLC9B1Q4ZJI4 515 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 PDCD4Q53EL6 469 aaKnown RBP11.7□□□□□ -0.54
SS18-204ENST00000539244 TNFAIP8L3Q5GJ75 292 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 RPS26P11Q5JNZ5 115 aaPredicted RBP11.7□□□□□ -0.54
SS18-204ENST00000539244 ATG16L1Q676U5 607 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 MSANTD1Q6ZTZ1 278 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 NET1Q7Z628 596 aaPredicted RBP11.7□□□□□ -0.54
SS18-204ENST00000539244 MREGQ8N565 214 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.7□□□□□ -0.54
SS18-204ENST00000539244 ADPRHL1Q8NDY3 354 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 MRPL24Q96A35 216 aaKnown RBP11.7□□□□□ -0.54
SS18-204ENST00000539244 ZNF75AQ96N20 296 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 OR2M2Q96R28 347 aa11.7□□□□□ -0.54
SS18-204ENST00000539244 DYSFO75923 2080 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 SH3PXD2BA1X283 911 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 TMEM247A6NEH6 219 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 TRPC5OSA6NMA1 111 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 M0R082 166 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 M0R233 179 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 HDAC3O15379 428 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 RGS16O15492 202 aaPredicted RBP11.69□□□□□ -0.54
SS18-204ENST00000539244 AKAP8O43823 692 aaKnown RBP11.69□□□□□ -0.54
SS18-204ENST00000539244 BMP2P12643 396 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 ZNF35P13682 527 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 IDO1P14902 403 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 EPHA3P29320 983 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 C1DQ13901 141 aaKnown RBP11.69□□□□□ -0.54
SS18-204ENST00000539244 MSMPQ1L6U9 139 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 ZNF311Q5JNZ3 666 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 ELFN2Q5R3F8 820 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 KRT80Q6KB66 452 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 H1FNTQ75WM6 255 aaPredicted RBP11.69□□□□□ -0.54
SS18-204ENST00000539244 LSMEM1Q8N8F7 131 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 SEMA6DQ8NFY4 1073 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 ZNF417Q8TAU3 575 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 SLC38A4Q969I6 547 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 TAAR8Q969N4 342 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 VPS33AQ96AX1 596 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 LRR1Q96L50 414 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 ZNF587Q96SQ5 575 aaPredicted RBP11.69□□□□□ -0.54
SS18-204ENST00000539244 MRPL37Q9BZE1 423 aaKnown RBP11.69□□□□□ -0.54
SS18-204ENST00000539244 RACGAP1Q9H0H5 632 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 MS4A5Q9H3V2 200 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 WDR55Q9H6Y2 383 aaPredicted RBP11.69□□□□□ -0.54
SS18-204ENST00000539244 CACYBPQ9HB71 228 aaKnown RBP11.69□□□□□ -0.54
SS18-204ENST00000539244 ZIM2Q9NZV7 527 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 METRNQ9UJH8 293 aa11.69□□□□□ -0.54
SS18-204ENST00000539244 IGKV1D-42A0A075B6H8 117 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 LYNX1G3V0Z9 82 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 SLC22A3O75751 556 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 ANP32DO95626 131 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 LYNX1P0DP58 116 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 ZNF14P17017 642 aaPredicted RBP11.68□□□□□ -0.54
SS18-204ENST00000539244 ACHEP22303 614 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 CFPP27918 469 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 GRPRP30550 384 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 GLRXP35754 106 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 HOXC5Q00444 222 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 IL1RL1Q01638 556 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 RUNX1T1Q06455 604 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 FADDQ13158 208 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 CCNIQ14094 377 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 GTDC1Q4AE62 458 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 PHYHD1Q5SRE7 291 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 WDR93Q6P2C0 686 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 NHLRC1Q6VVB1 395 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 C12orf54Q6X4T0 127 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 RINLQ6ZS11 566 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 GLCCI1Q86VQ1 547 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms