RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 Q96M85 177 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 FRMD6Q96NE9 622 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 LMF1Q96S06 567 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 DCLRE1CQ96SD1 692 aaKnown RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 PHOX2BQ99453 314 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 KCNJ15Q99712 375 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 COMMD4Q9H0A8 199 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 ZCCHC4Q9H5U6 513 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 RNF121Q9H920 327 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 WDR76Q9H967 626 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 RPRD1BQ9NQG5 326 aaKnown RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 INIPQ9NRY2 104 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 FBXL4Q9UKA2 621 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 RARRES3Q9UL19 164 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 PPIEQ9UNP9 301 aaKnown RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 RASD1Q9Y272 281 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 ZNF281Q9Y2X9 895 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 FKBP7Q9Y680 259 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 SIRT4Q9Y6E7 314 aaPredicted RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 CACNA1EQ15878 2313 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 SPTBP11277 2137 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 TMED7-TICAM2A0A0A6YYA0 188 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 A0A0G2JK05 382 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 SHISA3A0PJX4 238 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 MEIOCA2RUB1 952 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 SMIM30A4D0T7 59 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 HMX3A6NHT5 357 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 TMEM212A6NML5 194 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 A8MU76 341 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 B4DXG7 233 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 FAM47E-STBD1D6RA91 191 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 LRRN3E7EW58 273 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 E9PI62 339 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 CTDSPLO15194 276 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 OIP5O43482 229 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 SUSD5O60279 629 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 ALOX12BO75342 701 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 SCRG1O75711 98 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 SERPINI2O75830 405 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 UBL3O95164 117 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 RAF1P04049 648 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 ELK1P19419 428 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 MST1P26927 711 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 HLA-DMAP28067 261 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 CRABP1P29762 137 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 THBS2P35442 1172 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 ACVR1BP36896 505 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 DDOSTP39656 456 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 APOBEC1P41238 236 aaKnown RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 DHPSP49366 369 aaPredicted RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 DAP3P51398 398 aaKnown RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 DUSP3P51452 185 aaPredicted RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 RPL27P61353 136 aaKnown RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 RNF4P78317 190 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 DCDP81605 110 aaKnown RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 MRPS10P82664 201 aaKnown RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 EGR4Q05215 589 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 C17orf67Q0P5P2 114 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 RASGEF1BQ0VAM2 473 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 SELENBP1Q13228 472 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 MESTQ5EB52 335 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 VWA2Q5GFL6 755 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 UBE2NLQ5JXB2 153 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 LINC01590Q5TEZ4 76 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 EEF1A1P5Q5VTE0 462 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 C1orf140Q5VVS0 124 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 ZNF57Q68EA5 555 aaPredicted RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 UNQ9370/PRO34162Q6UXP9 181 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 APOOLQ6UXV4 268 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 NCCRP1Q6ZVX7 275 aaPredicted RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 SSX6Q7RTT6 188 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 KANSL1Q7Z3B3 1105 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 HDDC2Q7Z4H3 204 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 ANKRD37Q7Z713 158 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 CDC20BQ86Y33 519 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 TIGD4Q8IY51 512 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 PRR22Q8IZ63 422 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 EID2Q8N6I1 236 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 CELF2-AS1Q8N7Q2 184 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 EXD3Q8N9H8 876 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 ZNF248Q8NDW4 579 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 DUSP18Q8NEJ0 188 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 SLC22A8Q8TCC7 542 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 GPR119Q8TDV5 335 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 TTC9Q92623 222 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 TAAR8Q969N4 342 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 CREB3L1Q96BA8 519 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 KTI12Q96EK9 354 aaPredicted RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 ADAD1Q96M93 576 aaKnown RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 MOGAT1Q96PD6 335 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 TSPAN32Q96QS1 320 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 INTS14Q96SY0 518 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 NUDT22Q9BRQ3 303 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 OR2B2Q9GZK3 357 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 HDHD2Q9H0R4 259 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 C11orf54Q9H0W9 315 aaPredicted RBP6.02□□□□□ -1.45
USP28-206ENST00000538224 SLC26A1Q9H2B4 701 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 LRRN3Q9H3W5 708 aa6.02□□□□□ -1.45
USP28-206ENST00000538224 MARCH7Q9H992 704 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms