RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CREBZFQ9NS37 354 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 A0A0B4J2A0 478 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 HLA-HP01893 362 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 MGST1P10620 155 aaKnown RBP9.89□□□□□ -0.83
CLIP1-209ENST00000537178 JAG1P78504 1218 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 NTHL1P78549 312 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 PRDX1Q06830 199 aaKnown RBP9.89□□□□□ -0.83
CLIP1-209ENST00000537178 SYPL1Q16563 259 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 TMEM31Q5JXX7 168 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 CPXM2Q8N436 756 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 SECTM1Q8WVN6 248 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 SGPP1Q9BX95 441 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 LINC00597Q9H2U6 94 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 ZNF355PQ9NSJ1 428 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 RBFOX1Q9NWB1 397 aaKnown RBP9.89□□□□□ -0.83
CLIP1-209ENST00000537178 IL37Q9NZH6 218 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 SHPKQ9UHJ6 478 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 CAMK2AQ9UQM7 478 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 HEMK1Q9Y5R4 338 aaPredicted RBP9.89□□□□□ -0.83
CLIP1-209ENST00000537178 CEPT1Q9Y6K0 416 aa9.89□□□□□ -0.83
CLIP1-209ENST00000537178 POM121CA8CG34 1229 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 ADAM10O14672 748 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 PRICKLE3O43900 615 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 GDNFP39905 211 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 BAXQ07812 192 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 COL9A2Q14055 689 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 SLC5A12Q1EHB4 618 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 TMEM176BQ3YBM2 270 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 MISPQ8IVT2 679 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 RNF175Q8N4F7 328 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 OR10K1Q8NGX5 313 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 OR14A16Q8NHC5 309 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 FBXO27Q8NI29 283 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 CMTM2Q8TAZ6 248 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 PBX4Q9BYU1 374 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 BRWD1Q9NSI6 2320 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 ANKRD12Q6UB98 2062 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 LRIT2A6NDA9 550 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 ZNF732B4DXR9 585 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 K7EQM0 130 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 IMPA2O14732 288 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 UBL3O95164 117 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 F13BP05160 661 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 ANXA7P20073 488 aaKnown RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 BLVRBP30043 206 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 HOXA11P31270 313 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 GSK3AP49840 483 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 SIRPAP78324 504 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 LYSMD4Q5XG99 296 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 NLRP8Q86W28 1048 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 METTL4Q8N3J2 472 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 GTF2H4Q92759 462 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 SLC6A18Q96N87 628 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 KATNB1Q9BVA0 655 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 FN3KRPQ9HA64 309 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 ISYNA1Q9NPH2 558 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 NRIP3Q9NQ35 241 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 STARD5Q9NSY2 213 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 TAS2R16Q9NYV7 291 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 BHLHE40O14503 412 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 OPN1LWP04000 364 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 CLEC3BP05452 202 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 ZNF728P0DKX0 622 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 F3P13726 295 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 IL3RAP26951 378 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 MAOBP27338 520 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 CSNK1DP48730 415 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 ZNF140P52738 457 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 PDE7AQ13946 482 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 Q499Y3 187 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 MRPL2Q5T653 305 aaKnown RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 OR2G6Q5TZ20 316 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 NPSR1Q6W5P4 371 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 MRPL10Q7Z7H8 261 aaKnown RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 SCD5Q86SK9 330 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 OR52A1Q9UKL2 312 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 MRPS28Q9Y2Q9 187 aaKnown RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 TMEM184BQ9Y519 407 aaPredicted RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 PCDHGA5Q9Y5G8 931 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 H7C1Q1 480 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 SMAD6O43541 496 aaKnown RBP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 RGS11O94810 467 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 ELK1P19419 428 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 NFYBP25208 207 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 SLC36A2Q495M3 483 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 PLK5Q496M5 336 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 LYPD4Q6UWN0 246 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 FAM122BQ7Z309 247 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 ASB11Q8WXH4 323 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 ALG12Q9BV10 488 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 OR11A1Q9GZK7 315 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.88□□□□□ -0.83
CLIP1-209ENST00000537178 EMC9Q9Y3B6 208 aa9.88□□□□□ -0.83
CLIP1-209ENST00000537178 KIAA1217Q5T5P2 1943 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 TCRBV5S1A1TA0A578 114 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 ZNF593O00488 134 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 ENSAO43768 121 aaKnown RBP9.87□□□□□ -0.83
CLIP1-209ENST00000537178 MT-ND4LP03901 98 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 CR2P20023 1033 aa9.87□□□□□ -0.83
CLIP1-209ENST00000537178 CTSCP53634 463 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms