RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 USP43Q70EL4 1123 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 TUBA1AQ71U36 451 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 CXXC5Q7LFL8 322 aaKnown RBP10.79□□□□□ -0.68
CLIP1-208ENST00000537004 SLC29A4Q7RTT9 530 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 ADCK1Q86TW2 530 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 PSD4Q8NDX1 1056 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 SSC4DQ8WTU2 575 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 C3orf49Q96BT1 292 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 CENPOQ9BU64 300 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 H2AFY2Q9P0M6 372 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-208ENST00000537004 OSGIN1Q9UJX0 560 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 PMF1-BGLAPU3KQ54 211 aa10.79□□□□□ -0.68
CLIP1-208ENST00000537004 EML6Q6ZMW3 1958 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 PINLYPA6NC86 204 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 FAM183AA6NL82 134 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 GTPBP1O00178 669 aaKnown RBP10.78□□□□□ -0.68
CLIP1-208ENST00000537004 TO15178 435 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 ZNF264O43296 627 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 ICOSLGO75144 302 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 HTR1FP30939 366 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 MEOX1P50221 254 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 CCR4P51679 360 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 FHL1Q13642 323 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 ZNF829Q3KNS6 432 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-208ENST00000537004 TIMM50Q3ZCQ8 353 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 SLC35F1Q5T1Q4 408 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 DESI1Q6ICB0 168 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 PLBD1Q6P4A8 553 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 CBLN3Q6UW01 205 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 SHFQ7M4L6 423 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 FJX1Q86VR8 437 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 TMCO5AQ8N6Q1 288 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 OR5L2Q8NGL0 311 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 OR8K3Q8NH51 312 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 OTULINQ96BN8 352 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 TNFRSF13CQ96RJ3 184 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 FN3KQ9H479 309 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 RNF167Q9H6Y7 350 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 MCCC2Q9HCC0 563 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 EXOSC3Q9NQT5 275 aaKnown RBP10.78□□□□□ -0.68
CLIP1-208ENST00000537004 SLC5A6Q9Y289 635 aa10.78□□□□□ -0.68
CLIP1-208ENST00000537004 MYO7BQ6PIF6 2116 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 TMEM129A0AVI4 362 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 OR6C76A6NM76 312 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 ZNF24P17028 368 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 LCN1P31025 176 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 OPRL1P41146 370 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 PSMD7P51665 324 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 RPS3AP61247 264 aaKnown RBP10.77□□□□□ -0.68
CLIP1-208ENST00000537004 PLCXD2Q0VAA5 305 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 MLLT11Q13015 90 aaPredicted RBP10.77□□□□□ -0.68
CLIP1-208ENST00000537004 WBP2NLQ6ICG8 309 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 RTL4Q6ZR62 310 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 NCCRP1Q6ZVX7 275 aaPredicted RBP10.77□□□□□ -0.68
CLIP1-208ENST00000537004 GID4Q8IVV7 300 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 SIAH3Q8IW03 269 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 SLC15A4Q8N697 577 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 KBTBD8Q8NFY9 601 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 OR4F15Q8NGB8 312 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 OR5M3Q8NGP4 307 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 BORCS5Q969J3 196 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 SLIRPQ9GZT3 109 aaKnown RBP10.77□□□□□ -0.68
CLIP1-208ENST00000537004 CMC2Q9NRP2 79 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 ICAM5Q9UMF0 924 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 EXOSC1Q9Y3B2 195 aaKnown RBP10.77□□□□□ -0.68
CLIP1-208ENST00000537004 PCNX1Q96RV3 2341 aa10.77□□□□□ -0.68
CLIP1-208ENST00000537004 TSPAN2O60636 221 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 PPP1R3DO95685 299 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 LIMS3P0CW19 117 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 LIMS4P0CW20 117 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 CCL3P10147 92 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 ENDOUP21128 410 aaKnown RBP10.77□□□□□ -0.69
CLIP1-208ENST00000537004 SLC6A6P31641 620 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 WNT4P56705 351 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.77□□□□□ -0.69
CLIP1-208ENST00000537004 OR2G6Q5TZ20 316 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 NIPAL3Q6P499 406 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 LINC00299Q6ZSB3 139 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 ZNF441Q8N8Z8 693 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 C17orf47Q8NEP4 570 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 NUBPLQ8TB37 319 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 OMA1Q96E52 524 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 SGTBQ96EQ0 304 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 HSPBAP1Q96EW2 488 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 GPR137Q96N19 417 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 RTN4RQ9BZR6 473 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 MED20Q9H944 212 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 NDUFB11Q9NX14 153 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 TINAGQ9UJW2 476 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 BAIAP2Q9UQB8 552 aa10.77□□□□□ -0.69
CLIP1-208ENST00000537004 EXOGQ9Y2C4 368 aaKnown RBP10.77□□□□□ -0.69
CLIP1-208ENST00000537004 KLF13Q9Y2Y9 288 aaPredicted RBP10.77□□□□□ -0.69
CLIP1-208ENST00000537004 DCHS2Q6V1P9 2916 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 CSMD1Q96PZ7 3565 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 TRGV8A0A0C4DH27 118 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 ELOA3DA6NLF2 546 aaPredicted RBP10.76□□□□□ -0.69
CLIP1-208ENST00000537004 RIIAD1A6NNX1 92 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 MAGEB3O15480 346 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 ZG16O60844 167 aa10.76□□□□□ -0.69
CLIP1-208ENST00000537004 PPM1BO75688 479 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms