RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LIPT2A6NK58 231 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 G3V3Y1 287 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 PLPP3O14495 311 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 EFNA2O43921 213 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 SEC14L2O76054 403 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 RAB36O95755 333 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 FADS2O95864 444 aaKnown RBP19.07■□□□□ 0.64
VPS28-212ENST00000530836 ADORA3P0DMS8 318 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 HIST1H1CP16403 213 aaKnown RBP19.07■□□□□ 0.64
VPS28-212ENST00000530836 ERVK-25P63136 954 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 KHDRBS1Q07666 443 aaKnown RBP eCLIP19.07■□□□□ 0.64
VPS28-212ENST00000530836 IRF3Q14653 427 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 UBE2UQ5VVX9 321 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 NIPAL3Q6P499 406 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 H1FNTQ75WM6 255 aaPredicted RBP19.07■□□□□ 0.64
VPS28-212ENST00000530836 FAM122BQ7Z309 247 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 IGFN1Q86VF2 1251 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 SLC37A3Q8NCC5 494 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 OR52E2Q8NGJ4 325 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 OR13F1Q8NGS4 319 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 SLC39A7Q92504 469 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 RNFT2Q96EX2 444 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 ARL5BQ96KC2 179 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 FGF20Q9NP95 211 aaPredicted RBP19.07■□□□□ 0.64
VPS28-212ENST00000530836 INIPQ9NRY2 104 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 GRHPRQ9UBQ7 328 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 DIMT1Q9UNQ2 313 aaKnown RBP19.07■□□□□ 0.64
VPS28-212ENST00000530836 TRAPPC4Q9Y296 219 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 B3GALT5Q9Y2C3 310 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 ADAM18Q9Y3Q7 739 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 CPAMD8Q8IZJ3 1885 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 MPDZO75970 2070 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 GJE1A6NN92 205 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 H3BML4 177 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 CD97P48960 835 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 LGALS3BPQ08380 585 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 CRMP1Q14194 572 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 GXYLT1Q4G148 440 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 SYT6Q5T7P8 510 aaPredicted RBP19.06■□□□□ 0.64
VPS28-212ENST00000530836 JAZF1Q86VZ6 243 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 LSRQ86X29 649 aaPredicted RBP19.06■□□□□ 0.64
VPS28-212ENST00000530836 RBMXL3Q8N7X1 1067 aaKnown RBP19.06■□□□□ 0.64
VPS28-212ENST00000530836 ADPRHL1Q8NDY3 354 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 ATP6V1C2Q8NEY4 427 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 PTP4A1Q93096 173 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 OTULINQ96BN8 352 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 KLHL1Q9NR64 748 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 B4GALT7Q9UBV7 327 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 ERGIC3Q9Y282 383 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 KLF13Q9Y2Y9 288 aaPredicted RBP19.06■□□□□ 0.64
VPS28-212ENST00000530836 COMMD3-BMI1R4GMX3 469 aa19.06■□□□□ 0.64
VPS28-212ENST00000530836 NPIPB13A6NJU9 1138 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 FAM183AA6NL82 134 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 SHISA8B8ZZ34 492 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 NPIPB4C9JG80 1138 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 M0R082 166 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 RNF13O43567 381 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 ARG2P78540 354 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 MYBPHQ13203 477 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 OR7A5Q15622 319 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 RAET1LQ5VY80 246 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 OR4K13Q8NH42 304 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 ZNF417Q8TAU3 575 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 TMIGD2Q96BF3 282 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 LGALS12Q96DT0 336 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 SIGLEC12Q96PQ1 595 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 ZNF587Q96SQ5 575 aaPredicted RBP19.05■□□□□ 0.64
VPS28-212ENST00000530836 RBM38Q9H0Z9 239 aaKnown RBP19.05■□□□□ 0.64
VPS28-212ENST00000530836 CHST11Q9NPF2 352 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 FANCFQ9NPI8 374 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 DEPPQ9NTK1 212 aa19.05■□□□□ 0.64
VPS28-212ENST00000530836 CHCHD3Q9NX63 227 aaKnown RBP19.05■□□□□ 0.64
VPS28-212ENST00000530836 EXOGQ9Y2C4 368 aaKnown RBP19.05■□□□□ 0.64
VPS28-212ENST00000530836 LRRC3CA6NJW4 275 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 LINC01387J3KSC0 135 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 ZNF701M0R085 212 aaPredicted RBP19.04■□□□□ 0.64
VPS28-212ENST00000530836 IGHMP01871 453 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 F13BP05160 661 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 IMPDH2P12268 514 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 CD46P15529 392 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 IL11P20809 199 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 MAP2K4P45985 399 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 RAC1P63000 192 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 PUDPQ08623 228 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 POU4F2Q12837 409 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 MDS2Q8NDY4 140 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 OR2M7Q8NG81 312 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 OR52I1Q8NGK6 324 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 RACGAP1Q9H0H5 632 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 HAO2Q9NYQ3 351 aa19.04■□□□□ 0.64
VPS28-212ENST00000530836 RPH3AQ9Y2J0 694 aaPredicted RBP19.04■□□□□ 0.64
VPS28-212ENST00000530836 A0A0G2JMM0 328 aa19.03■□□□□ 0.64
VPS28-212ENST00000530836 TEX13CA0A0J9YWL9 993 aa19.03■□□□□ 0.64
VPS28-212ENST00000530836 A0A1W2PPB8 328 aa19.03■□□□□ 0.64
VPS28-212ENST00000530836 A0A1W2PRS3 328 aa19.03■□□□□ 0.64
VPS28-212ENST00000530836 OR2M5A3KFT3 312 aa19.03■□□□□ 0.64
VPS28-212ENST00000530836 KIR3DP1A8MWS1 328 aa19.03■□□□□ 0.64
VPS28-212ENST00000530836 SEC14L5O43304 696 aa19.03■□□□□ 0.64
VPS28-212ENST00000530836 F10P00742 488 aa19.03■□□□□ 0.64
VPS28-212ENST00000530836 MYL12AP19105 171 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms