RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 SCFD1Q8WVM8 642 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 ARNTL2Q8WYA1 636 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 SLC35B4Q969S0 331 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 PAGE5Q96GU1 130 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 IFT74Q96LB3 600 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 NIPSNAP3BQ9BS92 247 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 SPATA16Q9BXB7 569 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 ELOVL4Q9GZR5 314 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 RHBGQ9H310 441 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 VCXQ9H320 206 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 NHEJ1Q9H9Q4 299 aaPredicted RBP5.77□□□□□ -1.49
LSM1-202ENST00000520286 POLE4Q9NR33 117 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 SUN2Q9UH99 717 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 KLK13Q9UKR3 277 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 TFR2Q9UP52 801 aa5.77□□□□□ -1.49
LSM1-202ENST00000520286 DUOX1Q9NRD9 1551 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 PAPPA2Q9BXP8 1791 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 PP2D1A8MPX8 630 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 A8MX80 341 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 FAM220BPB1ANY3 271 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 F8VZ95 297 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 ZNF264O43296 627 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 TIMM8AO60220 97 aaPredicted RBP5.76□□□□□ -1.49
LSM1-202ENST00000520286 SCRG1O75711 98 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 RHBDL1O75783 438 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 UGT2B17O75795 530 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 IDO1P14902 403 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 CD80P33681 288 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 RPL34P49207 117 aaKnown RBP5.76□□□□□ -1.49
LSM1-202ENST00000520286 STX17P56962 302 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 TNNC1P63316 161 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 BEX3Q00994 111 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 VITQ6UXI7 678 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 APOBEC3FQ8IUX4 373 aaKnown RBP5.76□□□□□ -1.49
LSM1-202ENST00000520286 LRRC34Q8IZ02 419 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 MTURNQ8N3F0 131 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 MFSD9Q8NBP5 474 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 TOMM40LQ969M1 308 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 CYP2S1Q96SQ9 504 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 TMEM109Q9BVC6 243 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 KRTAP1-5Q9BYS1 174 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 NSRP1Q9H0G5 558 aaKnown RBP5.76□□□□□ -1.49
LSM1-202ENST00000520286 ETNK2Q9NVF9 386 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 ONECUT1Q9UBC0 465 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 AKAP11Q9UKA4 1901 aa5.76□□□□□ -1.49
LSM1-202ENST00000520286 KIAA0100Q14667 2235 aaKnown RBP5.75□□□□□ -1.49
LSM1-202ENST00000520286 FOXE1O00358 373 aaPredicted RBP5.75□□□□□ -1.49
LSM1-202ENST00000520286 PHF1O43189 567 aaPredicted RBP5.75□□□□□ -1.49
LSM1-202ENST00000520286 RAD51CO43502 376 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 TSPAN12O95859 305 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 MMP1P03956 469 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 CCL5P13501 91 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 MT3P25713 68 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 RPL13AP40429 203 aaKnown RBP5.75□□□□□ -1.49
LSM1-202ENST00000520286 MAGOHP61326 146 aaKnown RBP5.75□□□□□ -1.49
LSM1-202ENST00000520286 PAX2Q02962 417 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 DPYSL2Q16555 572 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 SLC22A6Q4U2R8 563 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 ZNF658Q5TYW1 1059 aaPredicted RBP5.75□□□□□ -1.49
LSM1-202ENST00000520286 UFSP1Q6NVU6 142 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 FAM199XQ6PEV8 388 aaPredicted RBP5.75□□□□□ -1.49
LSM1-202ENST00000520286 STXBP4Q6ZWJ1 553 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 SLC35F2Q8IXU6 374 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 OR4D9Q8NGE8 314 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 NELFBQ8WX92 580 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 MAGOHBQ96A72 148 aaKnown RBP5.75□□□□□ -1.49
LSM1-202ENST00000520286 CELF6Q96J87 481 aaKnown RBP5.75□□□□□ -1.49
LSM1-202ENST00000520286 SLC38A2Q96QD8 506 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 COPS8Q99627 209 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 CCDC77Q9BR77 488 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 ROPN1BQ9BZX4 212 aaPredicted RBP5.75□□□□□ -1.49
LSM1-202ENST00000520286 PKIBQ9C010 78 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 VCX3BQ9H321 246 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 VPS37BQ9H9H4 285 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 CAB39LQ9H9S4 337 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 VCX3AQ9NNX9 186 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 CUTCQ9NTM9 273 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 CLEC5AQ9NY25 188 aa5.75□□□□□ -1.49
LSM1-202ENST00000520286 FRMPD3Q5JV73 1810 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 MYH4Q9Y623 1939 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 IGKV3D-15A0A087WSY6 115 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 OR52A4PA6NMU1 304 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 KRTAP16-1A8MUX0 517 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 BTNL10A8MVZ5 291 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 F5H6K3 240 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 RNF113AO15541 343 aaKnown RBP5.74□□□□□ -1.49
LSM1-202ENST00000520286 CCDC130P13994 396 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 ZNF24P17028 368 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 EIF2S2P20042 333 aaKnown RBP5.74□□□□□ -1.49
LSM1-202ENST00000520286 IGHV1-2P23083 117 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 MRPS25P82663 173 aaKnown RBP5.74□□□□□ -1.49
LSM1-202ENST00000520286 KLRC3Q07444 240 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 BST1Q10588 318 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 RUNX3Q13761 415 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 SPA17Q15506 151 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 CROCCP2Q86T23 111 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 POM121L12Q8N7R1 296 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 ATP6V0D2Q8N8Y2 350 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 C17orf50Q8WW18 174 aa5.74□□□□□ -1.49
LSM1-202ENST00000520286 DNAJC9Q8WXX5 260 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms