RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 SOX3P41225 446 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 SLC1A6P48664 564 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 SLC18A1P54219 525 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 GAS1P54826 345 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 EEF1A1P68104 462 aaKnown RBP6.17□□□□□ -1.42
SDCBP-208ENST00000520228 FUT7Q11130 342 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 EBPQ15125 230 aaKnown RBP6.17□□□□□ -1.42
SDCBP-208ENST00000520228 RFTN2Q52LD8 501 aaPredicted RBP6.17□□□□□ -1.42
SDCBP-208ENST00000520228 AGBL2Q5U5Z8 902 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 EEF1A1P5Q5VTE0 462 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 CES4AQ5XG92 561 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 FAM71E1Q6IPT2 247 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 OPN5Q6U736 354 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF771Q7L3S4 317 aaPredicted RBP6.17□□□□□ -1.42
SDCBP-208ENST00000520228 GALNTL5Q7Z4T8 443 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 LINC00346Q8IVM7 164 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 C9orf40Q8IXQ3 194 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 MUC20Q8N307 709 aaPredicted RBP6.17□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF615Q8N8J6 731 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 SLC22A8Q8TCC7 542 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 MGARPQ8TDB4 240 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 TMEM255BQ8WV15 326 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 SECTM1Q8WVN6 248 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 PPP3R2Q96LZ3 170 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 TAAR6Q96RI8 345 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 GAL3ST4Q96RP7 486 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 DDOQ99489 341 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 NEURL2Q9BR09 285 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 NUDT16L1Q9BRJ7 211 aaKnown RBP6.17□□□□□ -1.42
SDCBP-208ENST00000520228 HES7Q9BYE0 225 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 WWTR1Q9GZV5 400 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 MIEF1Q9NQG6 463 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 HPF1Q9NWY4 346 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 TAS2R7Q9NYW3 318 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 ENTPD4Q9Y227 616 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 KLF13Q9Y2Y9 288 aaPredicted RBP6.17□□□□□ -1.42
SDCBP-208ENST00000520228 TMED5Q9Y3A6 229 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 ANKRD12Q6UB98 2062 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 MED13Q9UHV7 2174 aa6.17□□□□□ -1.42
SDCBP-208ENST00000520228 MDC1Q14676 2089 aaKnown RBP6.16□□□□□ -1.42
SDCBP-208ENST00000520228 ATP6AP2A0A1C7CYW4 349 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 OR2M5A3KFT3 312 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 ANKUB1A6NFN9 424 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 KLRC4-KLRK1H3BQV0 150 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 ATP6AP2O75787 350 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 LRATO95237 230 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 CLPSP04118 112 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 BCKDHAP12694 445 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 H2AFXP16104 143 aaPredicted RBP6.16□□□□□ -1.42
SDCBP-208ENST00000520228 SDC1P18827 310 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 NTSP30990 170 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 ASMTP46597 345 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 UQCRFS1P47985 274 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 RPL14P50914 215 aaKnown RBP6.16□□□□□ -1.42
SDCBP-208ENST00000520228 NR0B1P51843 470 aaKnown RBP6.16□□□□□ -1.42
SDCBP-208ENST00000520228 NCBP2P52298 156 aaKnown RBP eCLIP6.16□□□□□ -1.42
SDCBP-208ENST00000520228 RPL38P63173 70 aaKnown RBP6.16□□□□□ -1.42
SDCBP-208ENST00000520228 PPP2R2BQ00005 443 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 PMP22Q01453 160 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 BST1Q10588 318 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 UBE2V1Q13404 147 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 EXOSC7Q15024 291 aaKnown RBP6.16□□□□□ -1.42
SDCBP-208ENST00000520228 LTB4RQ15722 352 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF791Q3KP31 576 aaPredicted RBP6.16□□□□□ -1.42
SDCBP-208ENST00000520228 ATP6AP1LQ52LC2 224 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 TRMT12Q53H54 448 aaKnown RBP6.16□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF628Q5EBL2 1059 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 XKR7Q5GH72 579 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 C6orf136Q5SQH8 315 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 RTL4Q6ZR62 310 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 C18orf65Q6ZTR6 163 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 FAM9CQ8IZT9 166 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 KIRREL3Q8IZU9 778 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF781Q8N8C0 355 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 OR52R1Q8NGF1 315 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 OR9A2Q8NGT5 310 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 NR4A3Q92570 626 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 PHF21AQ96BD5 680 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 TUBGCP3Q96CW5 907 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 ERP27Q96DN0 273 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 FCRL1Q96LA6 429 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 TSSK3Q96PN8 268 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 SLX1AQ9BQ83 275 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 C20orf27Q9GZN8 174 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 LRMDAQ9H2I8 198 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 MAT2BQ9NZL9 334 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 GIMAP2Q9UG22 337 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 BCAP29Q9UHQ4 241 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 BAIAP2L1Q9UHR4 511 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF639Q9UID6 485 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 POU2F3Q9UKI9 436 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 CFL2Q9Y281 166 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 LRRK2Q5S007 2527 aa6.16□□□□□ -1.42
SDCBP-208ENST00000520228 FLNBO75369 2602 aaKnown RBP6.15□□□□□ -1.42
SDCBP-208ENST00000520228 SCN3AQ9NY46 2000 aa6.15□□□□□ -1.42
SDCBP-208ENST00000520228 A0A1W2PS18 150 aa6.15□□□□□ -1.42
SDCBP-208ENST00000520228 KRTAP29-1A8MX34 341 aaPredicted RBP6.15□□□□□ -1.42
SDCBP-208ENST00000520228 PLOD3O60568 738 aa6.15□□□□□ -1.42
SDCBP-208ENST00000520228 ZNF354AO60765 605 aaPredicted RBP6.15□□□□□ -1.42
SDCBP-208ENST00000520228 BCAS2O75934 225 aaPredicted RBP6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms