RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 YOD1Q5VVQ6 348 aaPredicted RBP11.7□□□□□ -0.54
USP53-209ENST00000514665 XAF1Q6GPH4 301 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 MEX3BQ6ZN04 569 aaKnown RBP11.7□□□□□ -0.54
USP53-209ENST00000514665 FAM109AQ8N4B1 249 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 RREB1Q92766 1687 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 SPTSSAQ969W0 71 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 EMC9Q9Y3B6 208 aa11.7□□□□□ -0.54
USP53-209ENST00000514665 TMEM82A0PJX8 343 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 RPL35P42766 123 aaKnown RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 GPLD1P80108 840 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 OPCMLQ14982 345 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 KRBOX4Q5JUW0 171 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 LIPNQ5VXI9 398 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 NKAIN2Q5VXU1 208 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 FIP1L1Q6UN15 594 aaKnown RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 CHRDL2Q6WN34 429 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 VASH1Q7L8A9 365 aaPredicted RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 SGPP2Q8IWX5 399 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 ZNF709Q8N972 641 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 SGCZQ96LD1 299 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 SYT3Q9BQG1 590 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 ZNF649Q9BS31 505 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 SELENOIQ9C0D9 397 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 STRADBQ9C0K7 418 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 TBX21Q9UL17 535 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 NPFFR2Q9Y5X5 522 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 KIAA1217Q5T5P2 1943 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 G3V3Y1 287 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 SULT1C4O75897 302 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 ATP1B1P05026 303 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 SERPINA2P20848 420 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 MALLQ13021 153 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 GPR176Q14439 515 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 ARL6IP1Q15041 203 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 FAM27D1Q5T7N8 215 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 HACD4Q5VWC8 232 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 C3orf33Q6P1S2 294 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 OR6V1Q8N148 313 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 IL17RCQ8NAC3 791 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 PLPP7Q8NBV4 271 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 ZNF436Q9C0F3 470 aaPredicted RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 RBM38Q9H0Z9 239 aaKnown RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 CHRDQ9H2X0 955 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 MUTYHQ9UIF7 546 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 C19orf53Q9UNZ5 99 aaPredicted RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 CAMK2AQ9UQM7 478 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 OR51B4Q9Y5P0 310 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 TNFRSF10AO00220 468 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 GALR3O60755 368 aaPredicted RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 TSPAN15O95858 294 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 DBHP09172 617 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 TSFMP43897 325 aaKnown RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 TPMTP51580 245 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 RBMS2Q15434 407 aaKnown RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 GPR157Q5UAW9 335 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 OTPQ5XKR4 325 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 KIAA0895LQ68EN5 471 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 STEAP2Q8NFT2 490 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 OR7G1Q8NGA0 311 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 OR13C5Q8NGS8 318 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 KIAA1143Q96AT1 154 aaPredicted RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 LCORQ96JN0 433 aaPredicted RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 OR51B6Q9H340 312 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 AKIP1Q9NQ31 210 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 ACOXLQ9NUZ1 547 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 PAPPAQ13219 1627 aa11.69□□□□□ -0.54
USP53-209ENST00000514665 MARF1Q9Y4F3 1742 aaKnown RBP11.69□□□□□ -0.54
USP53-209ENST00000514665 UPK1AO00322 258 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 WDPCPO95876 746 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 IFNA5P01569 189 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 BTN1A1Q13410 526 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 TNK1Q13470 666 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 FGL2Q14314 439 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 RHEBQ15382 184 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 DPY19L2P2Q6ZN68 376 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 ANKRD53Q8N9V6 530 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 ARL11Q969Q4 196 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 TSSK2Q96PF2 358 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 NDUFB11Q9NX14 153 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 ZNF175Q9Y473 711 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 SSC5DA1L4H1 1573 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 TMEM212A6NML5 194 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 ZFAND5O76080 213 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 SRMP19623 302 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 TRHRP34981 398 aaPredicted RBP11.68□□□□□ -0.54
USP53-209ENST00000514665 SEC61A1P61619 476 aaKnown RBP11.68□□□□□ -0.54
USP53-209ENST00000514665 FAM57BQ71RH2 274 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 PM20D2Q8IYS1 436 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 PRR18Q8N4B5 295 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 DNAAF1Q8NEP3 725 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 PAQR8Q8TEZ7 354 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 RRNAD1Q96FB5 475 aaKnown RBP11.68□□□□□ -0.54
USP53-209ENST00000514665 SLC41A2Q96JW4 573 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 FCRL1Q96LA6 429 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 OR2W5A6NFC9 320 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 M0QYG6 137 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 HTR2CP28335 458 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 WNT3P56703 355 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 MEF2DQ14814 521 aa11.68□□□□□ -0.54
USP53-209ENST00000514665 GLYATL3Q5SZD4 288 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms