RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 HSFY1Q96LI6 401 aa5.35□□□□□ -1.55
NUP54-215ENST00000514313 SORT1Q99523 831 aa5.35□□□□□ -1.55
NUP54-215ENST00000514313 NICN1Q9BSH3 213 aa5.35□□□□□ -1.55
NUP54-215ENST00000514313 MFFQ9GZY8 342 aa5.35□□□□□ -1.55
NUP54-215ENST00000514313 GBA3Q9H227 469 aa5.35□□□□□ -1.55
NUP54-215ENST00000514313 GEMIN7Q9H840 131 aaKnown RBP5.35□□□□□ -1.55
NUP54-215ENST00000514313 ADAP2Q9NPF8 381 aa5.35□□□□□ -1.55
NUP54-215ENST00000514313 KCNIP1Q9NZI2 227 aa5.35□□□□□ -1.55
NUP54-215ENST00000514313 EPOPA6NHQ4 379 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 OR2J3O76001 311 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 H6PDO95479 791 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 VDAC2P45880 294 aaPredicted RBP5.34□□□□□ -1.55
NUP54-215ENST00000514313 ACVR1Q04771 509 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 C9orf129Q5T035 196 aaKnown RBP5.34□□□□□ -1.55
NUP54-215ENST00000514313 TMIGD1Q6UXZ0 262 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 CENPQQ7L2Z9 268 aaPredicted RBP5.34□□□□□ -1.55
NUP54-215ENST00000514313 P2RY8Q86VZ1 359 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 PRR22Q8IZ63 422 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 NKAPP1Q8N9T2 125 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 OR4C5Q8NGB2 326 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 OR9G1Q8NH87 305 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 GPR151Q8TDV0 419 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 ACMSDQ8TDX5 336 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 SMARCD2Q92925 531 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 PLEKHF1Q96S99 279 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 CRLF2Q9HC73 371 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 TNFRSF19Q9NS68 423 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 VSIG4Q9Y279 399 aa5.34□□□□□ -1.55
NUP54-215ENST00000514313 ABCA7Q8IZY2 2146 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 NCF1BA6NI72 391 aaPredicted RBP5.33□□□□□ -1.56
NUP54-215ENST00000514313 NCF1CA8MVU1 366 aaPredicted RBP5.33□□□□□ -1.56
NUP54-215ENST00000514313 H0YIV9 168 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 CCL21O00585 134 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 CLOCKO15516 846 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 TSPAN13O95857 204 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 IGHV2-5P01817 119 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 C2P06681 752 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 OR8G3PP0DMU2 310 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 C21orf59P57076 290 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 RGS8P57771 180 aaPredicted RBP5.33□□□□□ -1.56
NUP54-215ENST00000514313 FBXW4P57775 412 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 IGLV3-21P80748 117 aaPredicted RBP5.33□□□□□ -1.56
NUP54-215ENST00000514313 ZNF836Q6ZNA1 936 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 SLC22A8Q8TCC7 542 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 C7orf33Q8WU49 177 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 STMN2Q93045 179 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 ZNF578Q96N58 590 aaPredicted RBP5.33□□□□□ -1.56
NUP54-215ENST00000514313 TGS1Q96RS0 853 aaKnown RBP5.33□□□□□ -1.56
NUP54-215ENST00000514313 BPIFA3Q9BQP9 254 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 PYGO2Q9BRQ0 406 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 C20orf24Q9BUV8 137 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 POLR2J2Q9GZM3 115 aaKnown RBP5.33□□□□□ -1.56
NUP54-215ENST00000514313 POLR2J3Q9H1A7 115 aaKnown RBP5.33□□□□□ -1.56
NUP54-215ENST00000514313 SH2D2AQ9NP31 389 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 AIG1Q9NVV5 245 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 QPCTLQ9NXS2 382 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 CHD4Q14839 1912 aa5.33□□□□□ -1.56
NUP54-215ENST00000514313 TRBV11-1A0A0K0K1C0 115 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 CASQ2O14958 399 aaPredicted RBP5.32□□□□□ -1.56
NUP54-215ENST00000514313 AGPAT2O15120 278 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 EIF3HO15372 352 aaKnown RBP eCLIP5.32□□□□□ -1.56
NUP54-215ENST00000514313 ERLIN2O94905 339 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 ANXA5P08758 320 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 PRDX3P30048 256 aaKnown RBP5.32□□□□□ -1.56
NUP54-215ENST00000514313 ARRB1P49407 418 aaPredicted RBP5.32□□□□□ -1.56
NUP54-215ENST00000514313 IRX3P78415 501 aaPredicted RBP5.32□□□□□ -1.56
NUP54-215ENST00000514313 MRPS22P82650 360 aaKnown RBP5.32□□□□□ -1.56
NUP54-215ENST00000514313 MERTKQ12866 999 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 PDIA2Q13087 525 aaKnown RBP5.32□□□□□ -1.56
NUP54-215ENST00000514313 ATP6AP1Q15904 470 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 LY6G6FQ5SQ64 297 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 TMEM220Q6QAJ8 160 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 Q6ZR54 194 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 EIF3MQ7L2H7 374 aaKnown RBP5.32□□□□□ -1.56
NUP54-215ENST00000514313 LUZP2Q86TE4 346 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 ZNF740Q8NDX6 193 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 ANKRD9Q96BM1 317 aaPredicted RBP5.32□□□□□ -1.56
NUP54-215ENST00000514313 RPUSD4Q96CM3 377 aaKnown RBP5.32□□□□□ -1.56
NUP54-215ENST00000514313 PELOQ9BRX2 385 aaKnown RBP5.32□□□□□ -1.56
NUP54-215ENST00000514313 ASF1AQ9Y294 204 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 RLFQ13129 1914 aa5.32□□□□□ -1.56
NUP54-215ENST00000514313 PHLPP2Q6ZVD8 1323 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 A0A0G2JLM5 398 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 A0A0J9YXY3 114 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 PPP1R2P9O14990 202 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 ZNF24P17028 368 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 SLC2A5P22732 501 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 OTX1P32242 354 aaPredicted RBP5.31□□□□□ -1.56
NUP54-215ENST00000514313 NSG1P42857 185 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 GLP1RP43220 463 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 TNNT2P45379 298 aaPredicted RBP5.31□□□□□ -1.56
NUP54-215ENST00000514313 APOC4P55056 127 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 IL18Q14116 193 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 CHRNA6Q15825 494 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 EOGTQ5NDL2 527 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 RFLNAQ6ZTI6 216 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 PUSL1Q8N0Z8 303 aaKnown RBP5.31□□□□□ -1.56
NUP54-215ENST00000514313 C14orf178Q8N769 122 aaPredicted RBP5.31□□□□□ -1.56
NUP54-215ENST00000514313 BPIFCQ8NFQ6 507 aa5.31□□□□□ -1.56
NUP54-215ENST00000514313 OR1S2Q8NGQ3 325 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms