RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PDE7AQ13946 482 aa15.05■□□□□ 0
CCDC88B-209ENST00000494080 GPNMBQ14956 572 aa15.05■□□□□ 0
CCDC88B-209ENST00000494080 RBMS2Q15434 407 aaKnown RBP15.05■□□□□ 0
CCDC88B-209ENST00000494080 RAET1LQ5VY80 246 aa15.05■□□□□ 0
CCDC88B-209ENST00000494080 FOXN4Q96NZ1 517 aa15.05■□□□□ 0
CCDC88B-209ENST00000494080 WDR77Q9BQA1 342 aaPredicted RBP15.05■□□□□ 0
CCDC88B-209ENST00000494080 TNS1Q9HBL0 1735 aaKnown RBP15.05■□□□□ 0
CCDC88B-209ENST00000494080 EIF4EP06730 217 aaKnown RBP15.05■□□□□ -0
CCDC88B-209ENST00000494080 HTR1FP30939 366 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 SEC61A1P61619 476 aaKnown RBP15.05■□□□□ -0
CCDC88B-209ENST00000494080 ZP2Q05996 745 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 SYT9Q86SS6 491 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 RELL2Q8NC24 303 aaPredicted RBP15.05■□□□□ -0
CCDC88B-209ENST00000494080 THRSPQ92748 146 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 FCMRO60667 390 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 BSGP35613 385 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 DUSP3P51452 185 aaPredicted RBP15.05■□□□□ -0
CCDC88B-209ENST00000494080 C19orf57Q0VDD7 668 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 DUSP5Q16690 384 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 HEPHL1Q6MZM0 1159 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 C10orf111Q8N326 155 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 ZNF283Q8N7M2 679 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 OR7G2Q8NG99 324 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 DAPP1Q9UN19 280 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 DHDHQ9UQ10 334 aa15.05■□□□□ -0
CCDC88B-209ENST00000494080 CDHR4A6H8M9 788 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 CDK2AP1O14519 115 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 WDPCPO95876 746 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 ADRB1P08588 477 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 SFTPDP35247 375 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 LUMP51884 338 aaPredicted RBP15.04■□□□□ -0
CCDC88B-209ENST00000494080 OR10A3P58181 314 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 ACY1Q03154 408 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 UBE2NLQ5JXB2 153 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 ZNF585AQ6P3V2 769 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 ZFP82Q8N141 532 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 ESX1Q8N693 406 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 C2CD4CQ8TF44 421 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 TCTN2Q96GX1 697 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 OR14A2Q96R54 314 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 PHB2Q99623 299 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 IFT22Q9H7X7 185 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 V9GYH0 126 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 ICE1Q9Y2F5 2266 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 BCAT2O15382 392 aaPredicted RBP15.04■□□□□ -0
CCDC88B-209ENST00000494080 CHP2O43745 196 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 F13BP05160 661 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 PET100P0DJ07 73 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 LIM2P55344 173 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 ZNF529Q6P280 563 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 PRICKLE2Q7Z3G6 844 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 PNLDC1Q8NA58 520 aaKnown RBP15.04■□□□□ -0
CCDC88B-209ENST00000494080 STEAP2Q8NFT2 490 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 SIDT1Q9NXL6 827 aaKnown RBP15.04■□□□□ -0
CCDC88B-209ENST00000494080 D6RAR5 112 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 LIX1LQ8IVB5 337 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 NKX6-2Q9C056 277 aaPredicted RBP15.04■□□□□ -0
CCDC88B-209ENST00000494080 INPP5EQ9NRR6 644 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 NPFFR2Q9Y5X5 522 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 TPT1P13693 172 aaKnown RBP15.04■□□□□ -0
CCDC88B-209ENST00000494080 MAOAP21397 527 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 RBMXP38159 391 aaKnown RBP15.04■□□□□ -0
CCDC88B-209ENST00000494080 PRPS1P60891 318 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 ABCA11PQ4W5N1 156 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 FAM27D1Q5T7N8 215 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 GLB1L2Q8IW92 636 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 TNFRSF13CQ96RJ3 184 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 MARVELD1Q9BSK0 173 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 NIT2Q9NQR4 276 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 UBQLN4Q9NRR5 601 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 MMP17Q9ULZ9 603 aa15.04■□□□□ -0
CCDC88B-209ENST00000494080 ZNF736B4DX44 427 aaPredicted RBP15.03■□□□□ -0
CCDC88B-209ENST00000494080 HRO43593 1189 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 RAB40ALP0C0E4 278 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 S100A12P80511 92 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 DYRK1AQ13627 763 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 PEA15Q15121 130 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 TMEM88Q6PEY1 159 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 NKAIN4Q8IVV8 208 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 RAB40AQ8WXH6 277 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 ZBTB8AQ96BR9 441 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 LINC00615Q96LM1 132 aaPredicted RBP15.03■□□□□ -0
CCDC88B-209ENST00000494080 NRTNQ99748 197 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 ATF6BQ99941 703 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 SCPEP1Q9HB40 452 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 MED17Q9NVC6 651 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 A0A087WUU8 490 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 A0A0D9SG52 128 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 AGAP14A8MT82 685 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 MLF2Q15773 248 aaPredicted RBP15.03■□□□□ -0
CCDC88B-209ENST00000494080 PTCRAQ6ISU1 281 aaPredicted RBP15.03■□□□□ -0
CCDC88B-209ENST00000494080 KLHDC8BQ8IXV7 354 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 MED18Q9BUE0 208 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 PLA2G2FQ9BZM2 168 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 SLC35A3Q9Y2D2 325 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 TNFRSF10CO14798 259 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 SEC14L5O43304 696 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 CXADRP78310 365 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 AVPI1Q5T686 147 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 LYSMD4Q5XG99 296 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms