RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 DLX1P56177 255 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 KLRC3Q07444 240 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 PDIA2Q13087 525 aaKnown RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 PLD1Q13393 1074 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 VGLL4Q14135 290 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 OXA1LQ15070 435 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 ATP6AP1Q15904 470 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 DUSP7Q16829 419 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 MICBQ29980 383 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 FAM83EQ2M2I3 478 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 PARP15Q460N3 678 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 BOLA3Q53S33 107 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 SAMD4BQ5PRF9 694 aaKnown RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 C1orf220Q5T0J3 134 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 MARCH8Q5T0T0 291 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 TMEM225Q6GV28 225 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 OR52E8Q6IFG1 317 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 C1orf94Q6P1W5 598 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 HSDL2Q6YN16 418 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 PGAP1Q75T13 922 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 GET4Q7L5D6 327 aaPredicted RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 THOC6Q86W42 341 aaKnown RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 ZNF695Q8IW36 515 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 C12orf56Q8IXR9 622 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 TTC5Q8N0Z6 440 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 ARRDC1Q8N5I2 433 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 ZNF615Q8N8J6 731 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 CYB561D1Q8N8Q1 229 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 GMCL1P1Q8NEA9 526 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 UBALD1Q8TB05 177 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 TRMT10AQ8TBZ6 339 aaKnown RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 FAM110BQ8TC76 370 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 MAIP1Q8WWC4 291 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 UBE2E3Q969T4 207 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 EXOSC8Q96B26 276 aaKnown RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 EFHD2Q96C19 240 aaPredicted RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 ITCHQ96J02 903 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 TSGA13Q96PP4 275 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 RAB34Q9BZG1 259 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 REEP4Q9H6H4 257 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 RMND5AQ9H871 391 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 ZFP14Q9HCL3 533 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 DMAP1Q9NPF5 467 aaPredicted RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 POLE4Q9NR33 117 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 CCL28Q9NRJ3 127 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 UFSP2Q9NUQ7 469 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 QPCTLQ9NXS2 382 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 SLC25A37Q9NYZ2 338 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 PIPOXQ9P0Z9 390 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 CLCF1Q9UBD9 225 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 COPS3Q9UNS2 423 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 RPL36Q9Y3U8 105 aaKnown RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 KIF16BQ96L93 1317 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 RPAP1Q9BWH6 1393 aaPredicted RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 PDS5BQ9NTI5 1447 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 LRP4O75096 1905 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 HSD17B6O14756 317 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 RBBP9O75884 186 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 C6orf47O95873 294 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 ABOP16442 354 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 ZNF14P17017 642 aaPredicted RBP1.28□□□□□ -2.2
SMC4-220ENST00000488017 RPL13AP40429 203 aaKnown RBP1.28□□□□□ -2.2
SMC4-220ENST00000488017 NMUP48645 174 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 EFNB2P52799 333 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 ACTA2P62736 377 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 ACTC1P68032 377 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 KLRB1Q12918 225 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 KIAA0087Q14695 138 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 MESDQ14696 234 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 GANABQ14697 944 aaKnown RBP1.28□□□□□ -2.2
SMC4-220ENST00000488017 DPYSL2Q16555 572 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 UBE2SQ16763 222 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 RSPO1Q2MKA7 263 aaPredicted RBP1.28□□□□□ -2.2
SMC4-220ENST00000488017 CCDC152Q4G0S7 254 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 OR4F3Q6IEY1 312 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 FRMPD2BQ6IN97 320 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 LCN12Q6JVE5 192 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 ECHDC2Q86YB7 292 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 MMAAQ8IVH4 418 aaKnown RBP1.28□□□□□ -2.2
SMC4-220ENST00000488017 CCDC50Q8IVM0 306 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 FAM133AQ8N9E0 248 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 IPMKQ8NFU5 416 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 OR10G2Q8NGC3 310 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 FRZBQ92765 325 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 UFD1Q92890 307 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 EMG1Q92979 244 aaKnown RBP1.28□□□□□ -2.2
SMC4-220ENST00000488017 LINC00477Q96M19 166 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 SLC38A2Q96QD8 506 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 TMEM246Q9BRR3 403 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 ANP32EQ9BTT0 268 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 ZSCAN5AQ9BUG6 496 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 CAPS2Q9BXY5 557 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 IFI27L2Q9H2X8 130 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 CLMPQ9H6B4 373 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 SIAEQ9HAT2 523 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 SMOXQ9NWM0 555 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 BLOC1S6Q9UL45 172 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 ZNF835Q9Y2P0 537 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 HEBP2Q9Y5Z4 205 aa1.28□□□□□ -2.2
SMC4-220ENST00000488017 DOCK9Q9BZ29 2069 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms