RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 RMND5AQ9H871 391 aa11.27□□□□□ -0.61
HDAC6-227ENST00000485102 SDR39U1Q9NRG7 319 aaPredicted RBP11.27□□□□□ -0.61
HDAC6-227ENST00000485102 RLIMQ9NVW2 624 aa11.27□□□□□ -0.61
HDAC6-227ENST00000485102 MGAM2Q2M2H8 2515 aa11.27□□□□□ -0.61
HDAC6-227ENST00000485102 LOC102725191A0A1B0GVB3 256 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 hCG_2039718K7EN88 272 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 NR5A2O00482 541 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 IL2RGP31785 369 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 THBS4P35443 961 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 COPZ1P61923 177 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 LGALS3BPQ08380 585 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 SLC9B1Q4ZJI4 515 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 GKAP1Q5VSY0 366 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-227ENST00000485102 PRAMEF8Q5VWM4 474 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 PRAMEF7Q5VXH5 474 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 NIPAL3Q6P499 406 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 UBASH3BQ8TF42 649 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 ALKBH3Q96Q83 286 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-227ENST00000485102 PANX1Q96RD7 426 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 WDR55Q9H6Y2 383 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-227ENST00000485102 ADPRHL2Q9NX46 363 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 CALML5Q9NZT1 146 aa11.26□□□□□ -0.61
HDAC6-227ENST00000485102 TENM1Q9UKZ4 2725 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 IGHV2OR16-5A0A0B4J2B6 119 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 SHOX2O60902 331 aaPredicted RBP11.25□□□□□ -0.61
HDAC6-227ENST00000485102 KRT75O95678 551 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 FAM107AO95990 144 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 GKN3PP0CG01 181 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 ITGA2P17301 1181 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 NCF2P19878 526 aaPredicted RBP11.25□□□□□ -0.61
HDAC6-227ENST00000485102 APEX1P27695 318 aaKnown RBP11.25□□□□□ -0.61
HDAC6-227ENST00000485102 SRP14P37108 136 aaKnown RBP11.25□□□□□ -0.61
HDAC6-227ENST00000485102 MVDP53602 400 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 ROR2Q01974 943 aaKnown RBP11.25□□□□□ -0.61
HDAC6-227ENST00000485102 RUNX1T1Q06455 604 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 BNIP2Q12982 314 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 LIN52Q52LA3 116 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 VHLLQ6RSH7 139 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 OR52P1PQ8NH57 321 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 TEX37Q96LM6 180 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 TMEM120AQ9BXJ8 343 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 SEC61A2Q9H9S3 476 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 METRNQ9UJH8 293 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 CHST2Q9Y4C5 530 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 GPR45Q9Y5Y3 372 aa11.25□□□□□ -0.61
HDAC6-227ENST00000485102 WNK2Q9Y3S1 2297 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 A0A096LPE4 126 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 A0A1W2PPZ6 126 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 B4DSR2 109 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 DCTN3O75935 186 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 PNMTP11086 282 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 ZNF43P17038 809 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 CDKN2CP42773 168 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 COMPP49747 757 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-227ENST00000485102 UFM1P61960 85 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 TUBA1BP68363 451 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 TUBA4AP68366 448 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 ARF1P84077 181 aaKnown RBP11.24□□□□□ -0.61
HDAC6-227ENST00000485102 EGR4Q05215 589 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 LARS2Q15031 903 aaKnown RBP11.24□□□□□ -0.61
HDAC6-227ENST00000485102 ADRM1Q16186 407 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 COX20Q5RI15 118 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 ZNF836Q6ZNA1 936 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 ZNF621Q6ZSS3 439 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 TUBA1AQ71U36 451 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 MYPOPQ86VE0 399 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-227ENST00000485102 VRK2Q86Y07 508 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 ZCCHC24Q8N2G6 241 aaKnown RBP11.24□□□□□ -0.61
HDAC6-227ENST00000485102 SVOPLQ8N434 492 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 OXGR1Q96P68 337 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 OR52E6Q96RD3 313 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 PTDSS2Q9BVG9 487 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 RACGAP1Q9H0H5 632 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 C12orf10Q9HB07 376 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 THUMPD1Q9NXG2 353 aaKnown RBP11.24□□□□□ -0.61
HDAC6-227ENST00000485102 B3GNT2Q9NY97 397 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 B3GAT1Q9P2W7 334 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 P2RX2Q9UBL9 471 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 ZNF232Q9UNY5 417 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 ARL2BPQ9Y2Y0 163 aa11.24□□□□□ -0.61
HDAC6-227ENST00000485102 A0A0G2JPF8 293 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 BBIP1A8MTZ0 92 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 HNRNPCL2B2RXH8 293 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 HNRNPCL3B7ZW38 293 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 OR2T1O43869 369 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 SNX3O60493 162 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 HNRNPCL1O60812 293 aaKnown RBP11.23□□□□□ -0.61
HDAC6-227ENST00000485102 SLC43A1O75387 559 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 AHSA1O95433 338 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 CELA3BP08861 270 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 ALDOCP09972 364 aaKnown RBP11.23□□□□□ -0.61
HDAC6-227ENST00000485102 ZCCHC18P0CG32 403 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 HNRNPCL4P0DMR1 293 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 IFNGR1P15260 489 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 NR4A1P22736 598 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 CFPP27918 469 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 IL12AP29459 219 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 POLR2JP52435 117 aaKnown RBP11.23□□□□□ -0.61
HDAC6-227ENST00000485102 CRISP3P54108 245 aa11.23□□□□□ -0.61
HDAC6-227ENST00000485102 CLDN17P56750 224 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms