RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 PRDM14Q9GZV8 571 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 SLC25A18Q9H1K4 315 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 SLC6A15Q9H2J7 730 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 PLCXD1Q9NUJ7 323 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 SCN3BQ9NY72 215 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 TVP23BQ9NYZ1 205 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 LHX6Q9UPM6 363 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 ZNF175Q9Y473 711 aa9.11□□□□□ -0.95
USP39-215ENST00000481409 A0A1W2PNR3 127 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 AHRRA9YTQ3 701 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 MCIDASD6RGH6 385 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 LRRN3E7EW58 273 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 XKRYO14609 159 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 GPR171O14626 319 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 TNFSF11O14788 317 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 AKR7A3O95154 331 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 WISP1O95388 367 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 BCL10O95999 233 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 CELA3AP09093 270 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 ZNF43P17038 809 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 GABRB1P18505 474 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 PTNP21246 168 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 AHCYP23526 432 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 RFC3P40938 356 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 P2RY4P51582 365 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 BLVRAP53004 296 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 SLC16A1P53985 500 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 FOXK1P85037 733 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 HSF1Q00613 529 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 CD47Q08722 323 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 RNPS1Q15287 305 aaKnown RBP9.1□□□□□ -0.95
USP39-215ENST00000481409 RNFT1Q5M7Z0 435 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 CLEC12AQ5QGZ9 265 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 C6orf141Q5SZD1 244 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 ZNF324BQ6AW86 544 aaPredicted RBP9.1□□□□□ -0.95
USP39-215ENST00000481409 THSD4Q6ZMP0 1018 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 JAZF1Q86VZ6 243 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 UEVLDQ8IX04 471 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 ARIH2OSQ8N7S6 290 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 TEX19Q8NA77 164 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 OR4Q3Q8NH05 313 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 IPCEF1Q8WWN9 437 aaPredicted RBP9.1□□□□□ -0.95
USP39-215ENST00000481409 SMPDL3BQ92485 455 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 INTS12Q96CB8 462 aaKnown RBP9.1□□□□□ -0.95
USP39-215ENST00000481409 TAAR6Q96RI8 345 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 TIMP4Q99727 224 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 KATNB1Q9BVA0 655 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 DEFB127Q9H1M4 99 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 TMEM185BQ9H7F4 350 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 CCNB1IP1Q9NPC3 277 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 GLRX2Q9NS18 164 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 H2AFY2Q9P0M6 372 aaPredicted RBP9.1□□□□□ -0.95
USP39-215ENST00000481409 ZMIZ1Q9ULJ6 1067 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.1□□□□□ -0.95
USP39-215ENST00000481409 RNF6Q9Y252 685 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 MYRFQ9Y2G1 1151 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 TPRKBQ9Y3C4 175 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 RPL36Q9Y3U8 105 aaKnown RBP9.1□□□□□ -0.95
USP39-215ENST00000481409 IER3IP1Q9Y5U9 82 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 PTPRQQ9UMZ3 2332 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 FREM3P0C091 2139 aa9.1□□□□□ -0.95
USP39-215ENST00000481409 MAGEA13PA6NCF6 341 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 OR6C65A6NJZ3 312 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 PRR23D1E9PI22 279 aaPredicted RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 NPIPA5E9PKD4 350 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 PRODHO43272 600 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 TLX2O43763 284 aaPredicted RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 CYTIPO60759 359 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 PPP1R3DO95685 299 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 RENP00797 406 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 IGFBP1P08833 259 aaPredicted RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 FAM87AP0C7U9 286 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 PRR23D2P0DMB1 279 aaPredicted RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 GABRA1P14867 456 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 TCEA1P23193 301 aaKnown RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 SHC1P29353 583 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 EIF1AXP47813 144 aaKnown RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 SLC25A1P53007 311 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 CLDN15P56746 228 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 CLDN20P56880 219 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 GABARAPL2P60520 117 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 LGALS3BPQ08380 585 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 C1DQ13901 141 aaKnown RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 SLC17A1Q14916 467 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 KCTD21Q4G0X4 260 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 SLC35D3Q5M8T2 416 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 TMEM236Q5W0B7 351 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 ABLIM2Q6H8Q1 611 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 UGT2A3Q6UWM9 527 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 MEX3DQ86XN8 651 aaKnown RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 CCDC71Q8IV32 467 aaPredicted RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 TMEM99Q8N816 258 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 TCEANCQ8N8B7 351 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 EXD3Q8N9H8 876 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 OR6X1Q8NH79 312 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 MOSPD2Q8NHP6 518 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 ZNF519Q8TB69 540 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 WDYHV1Q96HA8 205 aa9.09□□□□□ -0.95
USP39-215ENST00000481409 MYCBPQ99417 103 aaPredicted RBP9.09□□□□□ -0.95
USP39-215ENST00000481409 ALG12Q9BV10 488 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms