RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 C1DQ13901 141 aaKnown RBP14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 SCARB2Q14108 478 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 SQLEQ14534 574 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 GLIPR1L2Q4G1C9 344 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 AGKQ53H12 422 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 C6orf52Q5T4I8 152 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 ULK3Q6PHR2 472 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 TUBA1AQ71U36 451 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 H1FNTQ75WM6 255 aaPredicted RBP14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 GPR137CQ8N3F9 429 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 ADPRHL1Q8NDY3 354 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 BHLHE22Q8NFJ8 381 aaPredicted RBP14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 OR6S1Q8NH40 331 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 SLC47A1Q96FL8 570 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 ATP6V1G3Q96LB4 118 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 ZNF607Q96SK3 696 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 GPR35Q9HC97 309 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 CA10Q9NS85 328 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 KLHL14Q9P2G3 628 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 FKBP7Q9Y680 259 aa14.42□□□□□ -0.1
CCDC28B-204ENST00000469003 A0A087WUJ7 227 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 AKAP8O43823 692 aaKnown RBP14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 PDE5AO76074 875 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 IGKV3-15P01624 115 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 SLC6A2P23975 617 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 SERPINF1P36955 418 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 RGS8P57771 180 aaPredicted RBP14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 SNRPD2P62316 118 aaKnown RBP14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 ARF1P84077 181 aaKnown RBP14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 MFSD13AQ14CX5 517 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 HIPK4Q8NE63 616 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 PIK3C3Q8NEB9 887 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 OR4F15Q8NGB8 312 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 SORCS2Q96PQ0 1159 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 OR2M2Q96R28 347 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 CPPED1Q9BRF8 314 aaPredicted RBP14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 PRR14Q9BWN1 585 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 EVA1AQ9H8M9 152 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 TMEM27Q9HBJ8 222 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 SELENONQ9NZV5 590 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 CORINQ9Y5Q5 1042 aa14.41□□□□□ -0.1
CCDC28B-204ENST00000469003 A0A0B4J2E0 115 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 A0A1B0GX12 115 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 B9A039 149 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 MS4A18H0YCH9 400 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 TRAF3IP2O43734 574 aaPredicted RBP14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 SERPINB7O75635 380 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 LY6HO94772 140 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 IFNA2P01563 188 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 C8BP07358 591 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 CBR1P16152 277 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 CALCRP30988 508 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 PDLIM4P50479 330 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 IL1RL1Q01638 556 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 OR1Q1Q15612 314 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 ADIPOQQ15848 244 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 ADRM1Q16186 407 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 CEACAM16Q2WEN9 425 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 MS4A18Q3C1V0 323 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 CHRFAM7AQ494W8 412 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 TTMPQ5BVD1 217 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 PODNL1Q6PEZ8 512 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 DLEU7Q6UYE1 221 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 TMEM123Q8N131 208 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 SCAIQ8N9R8 606 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 DYDC1Q8WWB3 177 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 SLC41A3Q96GZ6 507 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 EPYCQ99645 322 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 RABEP2Q9H5N1 569 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 SEC61A2Q9H9S3 476 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 SLC13A4Q9UKG4 626 aa14.4□□□□□ -0.1
CCDC28B-204ENST00000469003 RNF212BA8MTL3 300 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 NDUFS8O00217 210 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 TPST2O60704 377 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 BGLAPP02818 100 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 NQO1P15559 274 aaKnown RBP14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 USF1P22415 310 aaPredicted RBP14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 CBLP22681 906 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 AQP1P29972 269 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 EFNB3Q15768 340 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 RUNDC3AQ59EK9 446 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 SLC46A3Q7Z3Q1 461 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 RANBP3LQ86VV4 465 aaPredicted RBP14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 ARMC8Q8IUR7 673 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 UEVLDQ8IX04 471 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 CCDC36Q8IYA8 594 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 NUP37Q8NFH4 326 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 RNF217Q8TC41 542 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 STON2Q8WXE9 905 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 ZNF837Q96EG3 531 aaPredicted RBP14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 ASPNQ9BXN1 380 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 CRLF2Q9HC73 371 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 TMEM160Q9NX00 188 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 ANGPT4Q9Y264 503 aa14.39□□□□□ -0.11
CCDC28B-204ENST00000469003 ZNF99A8MXY4 864 aaPredicted RBP14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 VWC2LB2RUY7 222 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 MFN2O95140 757 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 HPRP00739 348 aa14.38□□□□□ -0.11
CCDC28B-204ENST00000469003 CELA3BP08861 270 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms