RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 TRBV9A0A0B4J1U6 114 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 A0A1B0GUS0 222 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 CASTOR2A6NHX0 329 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 EIF4E1BA6NMX2 242 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 E9PAM4 449 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 ATP6V1G2-DDX39BF2Z307 99 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 F8W036 122 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 H0Y980 276 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 H3BTX0 84 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 J3QR06 171 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 hCG_2039718K7EN88 272 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 OR7A17O14581 309 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 SURF4O15260 269 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 TM9SF1O15321 606 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC16A5O15375 505 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 TGOLN2O43493 480 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 SYT7O43581 403 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 PRKAB2O43741 272 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 UGT1A9O60656 530 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 PFDN1O60925 122 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 HSBP1O75506 76 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 PLEKHA8P1O95397 391 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 CTDNEP1O95476 244 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 HLA-HP01893 362 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 PPBPP02775 128 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 VTNP04004 478 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 ALDOBP05062 364 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 CDK1P06493 297 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 UNGP13051 313 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 GFAPP14136 432 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 UQCRBP14927 111 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 TBXA2RP21731 343 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 IVDP26440 423 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 SRD5A2P31213 254 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 AMTP48728 403 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 CSNK1A1P48729 337 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 PRLHRP49683 370 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 FGF8P55075 233 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM50BP56557 158 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 DCDC1P59894 354 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 EWSR1Q01844 656 aaKnown RBP eCLIP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 SRSF6Q13247 344 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 IL18R1Q13478 541 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 NDUFA9Q16795 377 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 DEFB115Q30KQ5 88 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 KRTAP24-1Q3LI83 254 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 ACSF3Q4G176 576 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC22A6Q4U2R8 563 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 C9orf135Q5VTT2 229 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 SDHAF4Q5VUM1 108 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 LPCAT4Q643R3 524 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 TCEAL6Q6IPX3 200 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 EMBQ6PCB8 327 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 SPESP1Q6UW49 350 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 UNQ6126/PRO20091Q6UXV3 157 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 RBMS3Q6XE24 437 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 ACOT7LQ6ZUV0 252 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 AHSA2Q719I0 299 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 NUFIP2Q7Z417 695 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 ACOT1Q86TX2 421 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 DHFR2Q86XF0 187 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 JAGN1Q8N5M9 183 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 GCSAMQ8N6F7 178 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 OR51D1Q8NGF3 324 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 OR6M1Q8NGM8 313 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 OR9A4Q8NGU2 314 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 OR11L1Q8NGX0 322 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 RNASE11Q8TAA1 199 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 SSMEM1Q8WWF3 244 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM37Q8WXS4 190 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 TFGQ92734 400 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 MYLPFQ96A32 169 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 ISOC2Q96AB3 205 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 XPO6Q96QU8 1125 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 STACQ99469 402 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 TMEM109Q9BVC6 243 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 NMUR2Q9GZQ4 415 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 Q9H8V8 135 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 NOX4Q9NPH5 578 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC52A3Q9NQ40 469 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 ZC4H2Q9NQZ6 224 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 NANSQ9NR45 359 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 GSN-AS1Q9NRJ2 163 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 ACSS1Q9NUB1 689 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 ZDHHC2Q9UIJ5 367 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 AGO1Q9UL18 857 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 GUCA1BQ9UMX6 200 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 B3GALT5Q9Y2C3 310 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 NDUFAF1Q9Y375 327 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 ARL5AQ9Y689 179 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 STYXL1Q9Y6J8 313 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 CSNK1G3Q9Y6M4 447 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 CEMIPQ8WUJ3 1361 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 WDR7Q9Y4E6 1490 aa4.22□□□□□ -1.73
CCDC88A-210ENST00000468534 PPIP5K1Q6PFW1 1433 aa4.21□□□□□ -1.73
CCDC88A-210ENST00000468534 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 A0A1B0GV72 72 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 A0A1B0GVI7 797 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 LRP5LA4QPB2 252 aa4.21□□□□□ -1.74
CCDC88A-210ENST00000468534 PSMB11A5LHX3 300 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms