RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 RUNX2Q13950 521 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 CBFBQ13951 182 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 ADGRG3Q86Y34 549 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 FRMD1Q8N878 549 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 BRIX1Q8TDN6 353 aaKnown RBP11.38□□□□□ -0.59
HDAC4-208ENST00000463007 DUSP19Q8WTR2 217 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 NKD1Q969G9 470 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 MOAP1Q96BY2 351 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 MRPL38Q96DV4 380 aaKnown RBP11.38□□□□□ -0.59
HDAC4-208ENST00000463007 SLC25A38Q96DW6 304 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 SMIM19Q96E16 107 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 SEC22AQ96IW7 307 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 Q96M85 177 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 LMF1Q96S06 567 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 CNN2Q99439 309 aaKnown RBP11.38□□□□□ -0.59
HDAC4-208ENST00000463007 NRIP3Q9NQ35 241 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 LYARQ9NX58 379 aaKnown RBP11.38□□□□□ -0.59
HDAC4-208ENST00000463007 PIPOXQ9P0Z9 390 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 CDV3Q9UKY7 258 aaKnown RBP11.38□□□□□ -0.59
HDAC4-208ENST00000463007 MOKQ9UQ07 419 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 OR10H1Q9Y4A9 318 aa11.38□□□□□ -0.59
HDAC4-208ENST00000463007 IFITM5A6NNB3 132 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 MCRIP1C9JLW8 97 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 P2RX6O15547 441 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 TNFSF14O43557 240 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 SUSD5O60279 629 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 TPPPO94811 219 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 F13BP05160 661 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 P2RX1P51575 399 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 DEFB110Q30KQ9 67 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 B3GNTL1Q67FW5 361 aaPredicted RBP11.37□□□□□ -0.59
HDAC4-208ENST00000463007 TMEM88Q6PEY1 159 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 PXKQ7Z7A4 578 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 SFTPA2Q8IWL1 248 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 TMEM52Q8NDY8 209 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 OR51A4Q8NGJ6 313 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 OR2M4Q96R27 311 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 IGFLR1Q9H665 355 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 CD93Q9NPY3 652 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 H0Y8X5 98 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 IFNGP01579 166 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 CT62P0C5K7 136 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 S100A11P31949 105 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 ERV3-1Q14264 604 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 UBE2NLQ5JXB2 153 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 FAM122CQ6P4D5 195 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 FAM199XQ6PEV8 388 aaPredicted RBP11.37□□□□□ -0.59
HDAC4-208ENST00000463007 NUDT18Q6ZVK8 323 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 TMUB2Q71RG4 321 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 PARGQ86W56 976 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 GFI1Q99684 422 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 ACTR6Q9GZN1 396 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 FLRT3Q9NZU0 649 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 ABRACLQ9P1F3 81 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 NCDNQ9UBB6 729 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 ZNF230Q9UIE0 474 aaPredicted RBP11.37□□□□□ -0.59
HDAC4-208ENST00000463007 MRTO4Q9UKD2 239 aaKnown RBP11.37□□□□□ -0.59
HDAC4-208ENST00000463007 FARSAQ9Y285 508 aaKnown RBP11.37□□□□□ -0.59
HDAC4-208ENST00000463007 HEBP2Q9Y5Z4 205 aa11.37□□□□□ -0.59
HDAC4-208ENST00000463007 UBE2QL1A1L167 161 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 CCSO14618 274 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 FGF17O60258 216 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 RLN2P04090 185 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 ANXA2P07355 339 aaKnown RBP11.36□□□□□ -0.59
HDAC4-208ENST00000463007 VSIG10L2P0DP72 767 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 GTF2F2P13984 249 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 CTRB1P17538 263 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 CMPK1P30085 196 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 TAS2R43P59537 309 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 RPS11P62280 158 aaKnown RBP eCLIP11.36□□□□□ -0.59
HDAC4-208ENST00000463007 EEF1A1P68104 462 aaKnown RBP11.36□□□□□ -0.59
HDAC4-208ENST00000463007 CTRB2Q6GPI1 263 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 LRFN4Q6PJG9 635 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 GLB1L2Q8IW92 636 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 OR51D1Q8NGF3 324 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 OR51S1Q8NGJ8 323 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 LHFPL5Q8TAF8 219 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 TOE1Q96GM8 510 aaKnown RBP11.36□□□□□ -0.59
HDAC4-208ENST00000463007 BMFQ96LC9 184 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 PTDSS2Q9BVG9 487 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 NKX2-4Q9H2Z4 354 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 C12orf10Q9HB07 376 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 OR5V1Q9UGF6 321 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 ZNF223Q9UK11 482 aaPredicted RBP11.36□□□□□ -0.59
HDAC4-208ENST00000463007 PCDHGA9Q9Y5G4 932 aaKnown RBP11.36□□□□□ -0.59
HDAC4-208ENST00000463007 V9GY05 133 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 TBC1D3EA0A087X179 549 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 OR6C68A6NDL8 312 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 PRR32B1ATL7 298 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 FREM3P0C091 2139 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 SLC35G6P0C7Q6 338 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 SEC61A1P61619 476 aaKnown RBP11.36□□□□□ -0.59
HDAC4-208ENST00000463007 FAM53BQ14153 422 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 NHLRC3Q5JS37 347 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 OR7E24Q6IFN5 339 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 FAM219AQ8IW50 185 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 ZNF619Q8N2I2 560 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 PATE1Q8WXA2 126 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 MARC2Q969Z3 335 aa11.36□□□□□ -0.59
HDAC4-208ENST00000463007 ADAT1Q9BUB4 502 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms