RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PPOXP50336 477 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 MAGOHP61326 146 aaKnown RBP12.59□□□□□ -0.39
SDC1-204ENST00000429035 EGR4Q05215 589 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 SNTB2Q13425 540 aaKnown RBP12.59□□□□□ -0.39
SDC1-204ENST00000429035 EFNB3Q15768 340 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 ALG10BQ5I7T1 473 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 GCNT6Q5T4J0 391 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 KRT80Q6KB66 452 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 MDP1Q86V88 176 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 GOLGA6L1Q8N7Z2 621 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 MAGEE2Q8TD90 523 aaPredicted RBP12.59□□□□□ -0.39
SDC1-204ENST00000429035 OXGR1Q96P68 337 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 ZNF317Q96PQ6 595 aaPredicted RBP12.59□□□□□ -0.39
SDC1-204ENST00000429035 PAIP1Q9H074 479 aaKnown RBP12.59□□□□□ -0.39
SDC1-204ENST00000429035 TPK1Q9H3S4 243 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 PLK3Q9H4B4 646 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 CRLF2Q9HC73 371 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 GPR35Q9HC97 309 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 MOV10Q9HCE1 1003 aaKnown RBP12.59□□□□□ -0.39
SDC1-204ENST00000429035 SDR39U1Q9NRG7 319 aaPredicted RBP12.59□□□□□ -0.39
SDC1-204ENST00000429035 SELENONQ9NZV5 590 aa12.59□□□□□ -0.39
SDC1-204ENST00000429035 CRNNQ9UBG3 495 aaPredicted RBP12.59□□□□□ -0.39
SDC1-204ENST00000429035 IGHV2OR16-5A0A0B4J2B6 119 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 A0A1B0GWA3 101 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 VSTM5A8MXK1 200 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 IGLV1-44P01699 117 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 CD79AP11912 226 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 DAOP14920 347 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 ZNF23P17027 643 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 NPR2P20594 1047 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 PAX7P23759 505 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 HTR2AP28223 471 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 FADDQ13158 208 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 C3orf36Q3SXR2 165 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 FAM69AQ5T7M9 428 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 UEVLDQ8IX04 471 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 CDK20Q8IZL9 346 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 ZCCHC24Q8N2G6 241 aaKnown RBP12.58□□□□□ -0.4
SDC1-204ENST00000429035 C10orf53Q8N6V4 93 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 PIK3C3Q8NEB9 887 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 NUP37Q8NFH4 326 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 GTF2H4Q92759 462 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 TAAR8Q969N4 342 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 ZNF837Q96EG3 531 aaPredicted RBP12.58□□□□□ -0.4
SDC1-204ENST00000429035 BOD1Q96IK1 185 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 C19orf24Q9BVV8 132 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 B3GAT1Q9P2W7 334 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 SLC13A4Q9UKG4 626 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 RAB21Q9UL25 225 aa12.58□□□□□ -0.4
SDC1-204ENST00000429035 TRAV36DV7A0A075B6V5 113 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 ZNF503-AS2A6NEH8 195 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 POLR3GO15318 223 aaPredicted RBP12.57□□□□□ -0.4
SDC1-204ENST00000429035 OR2T1O43869 369 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 STAMBPO95630 424 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 IGKV3-15P01624 115 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 CBR1P16152 277 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 APEX1P27695 318 aaKnown RBP12.57□□□□□ -0.4
SDC1-204ENST00000429035 AQP1P29972 269 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 RGS8P57771 180 aaPredicted RBP12.57□□□□□ -0.4
SDC1-204ENST00000429035 POU3F1Q03052 451 aaPredicted RBP12.57□□□□□ -0.4
SDC1-204ENST00000429035 HGFACQ04756 655 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 DAG1Q14118 895 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 ADRM1Q16186 407 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 CR1LQ2VPA4 569 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 KRT73Q86Y46 540 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 ZNF540Q8NDQ6 660 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 CKAP2Q8WWK9 683 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 ANKRD27Q96NW4 1050 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 OR2M2Q96R28 347 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 SNX18Q96RF0 628 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 SOX7Q9BT81 388 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 EMC6Q9BV81 110 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 ASPNQ9BXN1 380 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 ZNF442Q9H7R0 627 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 BCL2L10Q9HD36 194 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 USP22Q9UPT9 525 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 USH1CQ9Y6N9 552 aa12.57□□□□□ -0.4
SDC1-204ENST00000429035 IGKV1D-42A0A075B6H8 117 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 ZNF99A8MXY4 864 aaPredicted RBP12.56□□□□□ -0.4
SDC1-204ENST00000429035 RPL36A-HNRNPH2H7BZ11 118 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 TRAF3IP2O43734 574 aaPredicted RBP12.56□□□□□ -0.4
SDC1-204ENST00000429035 ZNF432O94892 652 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 ARAFP10398 606 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 HOXB1P14653 301 aaPredicted RBP12.56□□□□□ -0.4
SDC1-204ENST00000429035 PRKAR1BP31321 381 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 ARR3P36575 388 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 SRP14P37108 136 aaKnown RBP12.56□□□□□ -0.4
SDC1-204ENST00000429035 CHN2P52757 468 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 CCNIQ14094 377 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 GLIPR1L2Q4G1C9 344 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 PHYHD1Q5SRE7 291 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 C5orf46Q6UWT4 87 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 C6orf89Q6UWU4 347 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 H1FNTQ75WM6 255 aaPredicted RBP12.56□□□□□ -0.4
SDC1-204ENST00000429035 COMTD1Q86VU5 262 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 DNAJA4Q8WW22 397 aaPredicted RBP12.56□□□□□ -0.4
SDC1-204ENST00000429035 NEU4Q8WWR8 484 aaPredicted RBP12.56□□□□□ -0.4
SDC1-204ENST00000429035 SPATA5L1Q9BVQ7 753 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 ULBP2Q9BZM5 246 aa12.56□□□□□ -0.4
SDC1-204ENST00000429035 C12orf10Q9HB07 376 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms