RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 WNT7BP56706 349 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 UBE2G1P62253 170 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 LCN6P62502 163 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 HIST2H3PS2Q5TEC6 136 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 WDR88Q6ZMY6 472 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 KLHDC8BQ8IXV7 354 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PAQR8Q8TEZ7 354 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ADAMTS14Q8WXS8 1223 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 S1PR3Q99500 378 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 TUBB1Q9H4B7 451 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 PRDM9Q9NQV7 894 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ZDHHC18Q9NUE0 388 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 CNIH4Q9P003 139 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 ADAM29Q9UKF5 820 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 KLK4Q9Y5K2 254 aa6.38□□□□□ -1.39
SCN1A-204ENST00000423058 MROH6A6NGR9 719 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 CYC1P08574 325 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 EDN3P14138 238 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 IMPA1P29218 277 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 SLC7A9P82251 487 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 MFAP5Q13361 173 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 SFT2D3Q587I9 215 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 FAM111BQ6SJ93 734 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 LIPIQ6XZB0 460 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 GLB1L2Q8IW92 636 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 KCNG3Q8TAE7 436 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 IFI44Q8TCB0 444 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 LCORQ96JN0 433 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 PRRX2Q99811 253 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 NT5DC2Q9H857 520 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 PROCRQ9UNN8 238 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 HS3ST3A1Q9Y663 406 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 RTTNQ86VV8 2226 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 SHISA7A6NL88 538 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 TACR1P25103 407 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 RTP2Q5QGT7 225 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 BTNL3Q6UXE8 466 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 RFPL4BQ6ZWI9 263 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 MRPL10Q7Z7H8 261 aaKnown RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 PQLC3Q8N755 202 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 OR1M1Q8NGA1 313 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 PPIL3Q9H2H8 161 aaKnown RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 C1GALT1Q9NS00 363 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 WRAP73Q9P2S5 460 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 OR52A4PA6NMU1 304 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 K7ERQ8 282 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 RFPL3O75679 317 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 CTXN2P0C2S0 81 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 HLA-FP30511 346 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 OPRD1P41143 372 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 SQSTM1Q13501 440 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 TCEAL1Q15170 157 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 PLAG1Q6DJT9 500 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 KANSL1Q7Z3B3 1105 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 CD163Q86VB7 1156 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 GTF2H4Q92759 462 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 FCRL3Q96P31 734 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 SOX7Q9BT81 388 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 SELENOIQ9C0D9 397 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 NMNAT1Q9HAN9 279 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 NDRG4Q9ULP0 352 aaKnown RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 CSNK1G3Q9Y6M4 447 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 OR6C76A6NM76 312 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 M0R3H8 397 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 ACP2P11117 423 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 LAMP1P11279 417 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 C21orf33P30042 268 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 TRIM23P36406 574 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 CSNK1DP48730 415 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 FABP6P51161 128 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 TAS2R45P59539 299 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 TNK1Q13470 666 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 CNIH2Q6PI25 160 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 TCTE3Q8IZS6 198 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 LMNTD1Q8N9Z9 388 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 SIMC1Q8NDZ2 872 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 SLC25A43Q8WUT9 341 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 FUBP1Q96AE4 644 aaKnown RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 APIPQ96GX9 242 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 HDAC8Q9BY41 377 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 WDR76Q9H967 626 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 SEMA4GQ9NTN9 838 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF346Q9UL40 294 aaKnown RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 A0A1B0GX78 115 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 H0Y8G0 127 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 TNFRSF10AO00220 468 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 MAKP20794 623 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 NOVA1P51513 510 aaKnown RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 BPIFB3P59826 476 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 FAM162BQ5T6X4 162 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 LCN8Q6JVE9 175 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 ZDHHC24Q6UX98 284 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 TSEN54Q7Z6J9 526 aaKnown RBP6.37□□□□□ -1.39
SCN1A-204ENST00000423058 FBXL14Q8N1E6 418 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM185AQ8NFB2 350 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 CHAC2Q8WUX2 184 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 ST8SIA2Q92186 375 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 TFAP2CQ92754 450 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 NEIL2Q969S2 332 aa6.37□□□□□ -1.39
SCN1A-204ENST00000423058 HHIPL1Q96JK4 782 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms