RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 INTS11Q5TA45 600 aaKnown RBP16.66■□□□□ 0.26
SF3A1-202ENST00000411423 PRSS57Q6UWY2 283 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 TUBA1AQ71U36 451 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 SLC26A7Q8TE54 656 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 SH3GL1Q99961 368 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 ZNF426Q9BUY5 554 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 TRAF4Q9BUZ4 470 aaPredicted RBP16.66■□□□□ 0.26
SF3A1-202ENST00000411423 EMC6Q9BV81 110 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 SELENONQ9NZV5 590 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 RCE1Q9Y256 329 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 AMDHD2Q9Y303 409 aa16.66■□□□□ 0.26
SF3A1-202ENST00000411423 A0A096LPE4 126 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 A0A1W2PPZ6 126 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 ZNF503-AS2A6NEH8 195 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 FAM220BPB1ANY3 271 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 ZNF587BE7ETH6 402 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 PLPP3O14495 311 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 ARHGEF9O43307 516 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 NDUFS7O75251 213 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 FOSL1P15407 271 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 PTAFRP25105 342 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 VEZF1Q14119 521 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 TMEM108Q6UXF1 575 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 CARM1Q86X55 608 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 LRRC17Q8N6Y2 441 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 C18orf12Q96KH6 178 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 EPYCQ99645 322 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 CXorf56Q9H5V9 222 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 SEC61A2Q9H9S3 476 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 GPR35Q9HC97 309 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 MRGBPQ9NV56 204 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 MED29Q9NX70 200 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 MRPL39Q9NYK5 338 aaKnown RBP16.65■□□□□ 0.26
SF3A1-202ENST00000411423 SH3GLB1Q9Y371 365 aa16.65■□□□□ 0.26
SF3A1-202ENST00000411423 IGHV1-18A0A0C4DH31 117 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 TRAPPC13A5PLN9 417 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 RPL36A-HNRNPH2H7BZ11 118 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 H7C1Q1 480 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 KPNA4O00629 521 aaPredicted RBP16.64■□□□□ 0.25
SF3A1-202ENST00000411423 SLC22A2O15244 555 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 ATP8B1O43520 1251 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 KRT33AO76009 404 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 COX4I1P13073 169 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 NQO1P15559 274 aaKnown RBP16.64■□□□□ 0.25
SF3A1-202ENST00000411423 OR1E2P47887 323 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 ATP5J2P56134 94 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 PRPS1P60891 318 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 IL1RL1Q01638 556 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 POU3F1Q03052 451 aaPredicted RBP16.64■□□□□ 0.25
SF3A1-202ENST00000411423 TGFBR3Q03167 851 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 PMS2P3Q13401 168 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 C1DQ13901 141 aaKnown RBP16.64■□□□□ 0.25
SF3A1-202ENST00000411423 ZNF74Q16587 644 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 CARD17Q5XLA6 110 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 C11orf71Q6IPW1 123 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 C8orf82Q6P1X6 216 aaPredicted RBP16.64■□□□□ 0.25
SF3A1-202ENST00000411423 SLC22A25Q6T423 547 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 SSX8Q7RTT4 187 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 DTX2Q86UW9 622 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 NKAIN4Q8IVV8 208 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 UEVLDQ8IX04 471 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 SLC15A3Q8IY34 581 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 C10orf53Q8N6V4 93 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 SCAIQ8N9R8 606 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 PCYOX1LQ8NBM8 494 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 RP9Q8TA86 221 aaKnown RBP16.64■□□□□ 0.25
SF3A1-202ENST00000411423 COX4I2Q96KJ9 171 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 ELAC2Q9BQ52 826 aaKnown RBP16.64■□□□□ 0.25
SF3A1-202ENST00000411423 ASPNQ9BXN1 380 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 MEPEQ9NQ76 525 aaPredicted RBP16.64■□□□□ 0.25
SF3A1-202ENST00000411423 GID8Q9NWU2 228 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 CORINQ9Y5Q5 1042 aa16.64■□□□□ 0.25
SF3A1-202ENST00000411423 SLC43A1O75387 559 aa16.63■□□□□ 0.25
SF3A1-202ENST00000411423 SEC14L2O76054 403 aa16.63■□□□□ 0.25
SF3A1-202ENST00000411423 CH25HO95992 272 aa16.63■□□□□ 0.25
SF3A1-202ENST00000411423 INHBBP09529 407 aa16.63■□□□□ 0.25
SF3A1-202ENST00000411423 RIPPLY3P57055 190 aa16.63■□□□□ 0.25
SF3A1-202ENST00000411423 ARF1P84077 181 aaKnown RBP16.63■□□□□ 0.25
SF3A1-202ENST00000411423 ERICH5Q6P6B1 374 aa16.63■□□□□ 0.25
SF3A1-202ENST00000411423 KLHL17Q6TDP4 642 aa16.63■□□□□ 0.25
SF3A1-202ENST00000411423 Q71RC1 249 aaPredicted RBP16.63■□□□□ 0.25
SF3A1-202ENST00000411423 SLC46A3Q7Z3Q1 461 aa16.63■□□□□ 0.25
SF3A1-202ENST00000411423 ABHD12BQ7Z5M8 362 aaPredicted RBP16.63■□□□□ 0.25
SF3A1-202ENST00000411423 MYPOPQ86VE0 399 aaPredicted RBP16.63■□□□□ 0.25
SF3A1-202ENST00000411423 MICU2Q8IYU8 434 aa16.63■□□□□ 0.25
SF3A1-202ENST00000411423 TAS2R5Q9NYW4 299 aa16.63■□□□□ 0.25
SF3A1-202ENST00000411423 GDF2Q9UK05 429 aaPredicted RBP16.63■□□□□ 0.25
SF3A1-202ENST00000411423 SLC35F4A4IF30 521 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 OR6C65A6NJZ3 312 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 C11orf98E9PRG8 122 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 ATP6V1G2-DDX39BF2Z307 99 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 NME4O00746 187 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 TMCC2O75069 709 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 IGHV4-39P01824 125 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 KDELR2P33947 212 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 GYS2P54840 703 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 UGT2B15P54855 530 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 PUDPQ08623 228 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 MFSD13AQ14CX5 517 aa16.62■□□□□ 0.25
SF3A1-202ENST00000411423 CEACAM16Q2WEN9 425 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms