RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 FAM111BQ6SJ93 734 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 CEACAM19Q7Z692 300 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 ZNF679Q8IYX0 411 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 IFI44Q8TCB0 444 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 PP6455Q8WZ26 134 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 CNOT9Q92600 299 aaKnown RBP3.11□□□□□ -1.91
VPS13C-203ENST00000395896 NXF5Q9H1B4 397 aaKnown RBP3.11□□□□□ -1.91
VPS13C-203ENST00000395896 DPAGT1Q9H3H5 408 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 RANBP3Q9H6Z4 567 aaPredicted RBP3.11□□□□□ -1.91
VPS13C-203ENST00000395896 ELL3Q9HB65 397 aaPredicted RBP3.11□□□□□ -1.91
VPS13C-203ENST00000395896 FGF20Q9NP95 211 aaPredicted RBP3.11□□□□□ -1.91
VPS13C-203ENST00000395896 CACFD1Q9UGQ2 172 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 PRAMEF25A6NGN4 478 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 J3QLW9 94 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 SORBS2O94875 1100 aaKnown RBP3.11□□□□□ -1.91
VPS13C-203ENST00000395896 HRGP04196 525 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 ZNF19P17023 458 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 TBPP20226 339 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 AGTR1P30556 359 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 SSTR4P31391 388 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 MTNR1BP49286 362 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 DIO1P49895 249 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 ART1P52961 327 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 TSPAN5P62079 268 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 PSG6Q00889 435 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 SLC3A1Q07837 685 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 COL19A1Q14993 1142 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 EBPQ15125 230 aaKnown RBP3.11□□□□□ -1.91
VPS13C-203ENST00000395896 GALNTL5Q7Z4T8 443 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 SLC22A16Q86VW1 577 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 MFSD8Q8NHS3 518 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 PPP1R35Q8TAP8 253 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 JSRP1Q96MG2 331 aaPredicted RBP3.11□□□□□ -1.91
VPS13C-203ENST00000395896 OR5B2Q96R09 309 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 ALG12Q9BV10 488 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 CENPMQ9NSP4 180 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 A6NCN8 305 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 D6RAR5 112 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 CREBL2O60519 120 aaPredicted RBP3.11□□□□□ -1.91
VPS13C-203ENST00000395896 SERPINA7P05543 415 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 MAOAP21397 527 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 TGM4P49221 684 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 FNTBP49356 437 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 HYAL2Q12891 473 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 TCTN1Q2MV58 587 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 IDNKQ5T6J7 187 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 AGAP7PQ5VUJ5 663 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 MARCH9Q86YJ5 346 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 PLCZ1Q86YW0 608 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 TIGD4Q8IY51 512 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 MRPS24Q96EL2 167 aaKnown RBP3.11□□□□□ -1.91
VPS13C-203ENST00000395896 AGAP4Q96P64 663 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 SYT3Q9BQG1 590 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 PLA2G2FQ9BZM2 168 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 WWTR1Q9GZV5 400 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 MED28Q9H204 178 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 NDUFB11Q9NX14 153 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 PISDQ9UG56 409 aa3.11□□□□□ -1.91
VPS13C-203ENST00000395896 TRBV11-1A0A0K0K1C0 115 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 ASPDHA6ND91 283 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 OR7A10O76100 309 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 CPEP16870 476 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 GDI2P50395 445 aaKnown RBP3.1□□□□□ -1.91
VPS13C-203ENST00000395896 CNN3Q15417 329 aaKnown RBP3.1□□□□□ -1.91
VPS13C-203ENST00000395896 KCNJ8Q15842 424 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 C1orf140Q5VVS0 124 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 RNF175Q8N4F7 328 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 STEAP2Q8NFT2 490 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 CPNE4Q96A23 557 aaPredicted RBP3.1□□□□□ -1.91
VPS13C-203ENST00000395896 TMEM106AQ96A25 262 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 ZFP3Q96NJ6 502 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 OPA3Q9H6K4 179 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 KLHL13Q9P2N7 655 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 CYR61O00622 381 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 CSF1P09603 554 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 EIF2B2P49770 351 aaKnown RBP3.1□□□□□ -1.91
VPS13C-203ENST00000395896 MXD1Q05195 221 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 RBPJQ06330 500 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 RSU1Q15404 277 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 GLYR1Q49A26 553 aaPredicted RBP3.1□□□□□ -1.91
VPS13C-203ENST00000395896 ESPNLQ6ZVH7 1005 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 SLC16A9Q7RTY1 509 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 VRK2Q86Y07 508 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 KLBQ86Z14 1044 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 PHC2Q8IXK0 858 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 PM20D2Q8IYS1 436 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 INO80EQ8NBZ0 244 aaPredicted RBP3.1□□□□□ -1.91
VPS13C-203ENST00000395896 IL17RDQ8NFM7 739 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 DUSP19Q8WTR2 217 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 CCDC74AQ96AQ1 378 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 C10orf35Q96D05 121 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 ZC3H10Q96K80 434 aaKnown RBP3.1□□□□□ -1.91
VPS13C-203ENST00000395896 PRRT1Q99946 306 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 MMP25Q9NPA2 562 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 EIF3KQ9UBQ5 218 aaKnown RBP3.1□□□□□ -1.91
VPS13C-203ENST00000395896 DDOSTP39656 456 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 GFERP55789 205 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 TPTEP56180 551 aa3.1□□□□□ -1.91
VPS13C-203ENST00000395896 EXOSC7Q15024 291 aaKnown RBP3.1□□□□□ -1.91
VPS13C-203ENST00000395896 C22orf42Q6IC83 251 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms