RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CLIP4Q8N3C7 705 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 OR10H4Q8NGA5 316 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 OR11L1Q8NGX0 322 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 THEM6Q8WUY1 208 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 MIB2Q96AX9 1013 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 ABCB9Q9NP78 766 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 TNRC6BQ9UPQ9 1833 aaKnown RBP8.27□□□□□ -1.09
UPF2-202ENST00000357604 CD8B2A6NJW9 211 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 ZNF432O94892 652 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 GOSR1O95249 250 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 CRYAAP02489 173 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 HOXB1P14653 301 aaPredicted RBP8.27□□□□□ -1.09
UPF2-202ENST00000357604 RIDAP52758 137 aaKnown RBP8.27□□□□□ -1.09
UPF2-202ENST00000357604 ERVK-25P63136 954 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 ADAM8P78325 824 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 FAPQ12884 760 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 PPA1Q15181 289 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 C3orf49Q96BT1 292 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 C11orf24Q96F05 449 aaPredicted RBP8.27□□□□□ -1.09
UPF2-202ENST00000357604 MROQ9BYG7 248 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 OPA3Q9H6K4 179 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 MTRF1O75570 445 aaKnown RBP8.27□□□□□ -1.09
UPF2-202ENST00000357604 TBX6O95947 436 aaPredicted RBP8.27□□□□□ -1.09
UPF2-202ENST00000357604 IGKV1D-16P01601 117 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 CD14P08571 375 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 MSR1P21757 451 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 RPS4Y1P22090 263 aaKnown RBP8.27□□□□□ -1.09
UPF2-202ENST00000357604 GNLYP22749 145 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 EIF2B1Q14232 305 aaKnown RBP8.27□□□□□ -1.09
UPF2-202ENST00000357604 FAM214BQ7L5A3 538 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 PXKQ7Z7A4 578 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 C17orf78Q8N4C9 275 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 DNAJA3Q96EY1 480 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 TUBA1CQ9BQE3 449 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 DGCR6LQ9BY27 220 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 WARS2Q9UGM6 360 aaKnown RBP8.27□□□□□ -1.09
UPF2-202ENST00000357604 SCOCQ9UIL1 159 aa8.27□□□□□ -1.09
UPF2-202ENST00000357604 LRRK1Q38SD2 2015 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 A0A1W2PS29 197 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 LIPT2A6NK58 231 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 ANKRD30BLA7E2S9 258 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 SURF4O15260 269 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 DIRAS1O95057 198 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 LCKP06239 509 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 GGT2P36268 569 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 CDH11P55287 796 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 VASNQ6EMK4 673 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 ERI1Q8IV48 349 aaKnown RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 GLB1L2Q8IW92 636 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 EGLN1Q9GZT9 426 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 DECR2Q9NUI1 292 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 ZNF629Q9UEG4 869 aaPredicted RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 LIPGQ9Y5X9 500 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 TRAV27A0A087WT01 109 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 WISP1O95388 367 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 IFNGR1P15260 489 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 ZNF708P17019 499 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 CAPGP40121 348 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 RGS6P49758 472 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 GRB2P62993 217 aaKnown RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 CARTPTQ16568 116 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 SLC25A53Q5H9E4 307 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 IZUMO2Q6UXV1 221 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 MRPL21Q7Z2W9 205 aaKnown RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 TRMT61AQ96FX7 289 aaKnown RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 RLIMQ9NVW2 624 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 CD300AQ9UGN4 299 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 RAB26Q9ULW5 256 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 MEMO1Q9Y316 297 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 HSPE1-MOB4S4R3N1 261 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 TDRD6O60522 2096 aaKnown RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 LRP4O75096 1905 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 ASPDHA6ND91 283 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 TERTO14746 1132 aaKnown RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 IGF2P01344 180 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 TNFRSF1BP20333 461 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 AQP2P41181 271 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 CD226Q15762 336 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 C3AR1Q16581 482 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 ZNF74Q16587 644 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 ZIK1Q3SY52 487 aaPredicted RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 TMEM154Q6P9G4 183 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 PAMR1Q6UXH9 720 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 ATG4DQ86TL0 474 aaPredicted RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 NPEPL1Q8NDH3 523 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 TRUB1Q8WWH5 349 aaKnown RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 AKAP1Q92667 903 aaKnown RBP eCLIP8.26□□□□□ -1.09
UPF2-202ENST00000357604 OR11A1Q9GZK7 315 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 RNPEPL1Q9HAU8 725 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 SLC7A11Q9UPY5 501 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 TMEM131Q92545 1883 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 A0A1W2PNU3 283 aaPredicted RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 CD2P06729 351 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 HTR1AP08908 422 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 CA7P43166 264 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 PTDSS1P48651 473 aaKnown RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 ZNF239Q16600 458 aaKnown RBP8.26□□□□□ -1.09
UPF2-202ENST00000357604 PGGHGQ32M88 737 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 SLC22A25Q6T423 547 aa8.26□□□□□ -1.09
UPF2-202ENST00000357604 ZNF540Q8NDQ6 660 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms