RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 FAM74A1Q5RGS3 127 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 ZNF425Q6IV72 752 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 MAMSTRQ6ZN01 415 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 TMPRSS12Q86WS5 348 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 PDZD9Q8IXQ8 264 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 MUC20Q8N307 709 aaPredicted RBP20.47■□□□□ 0.87
TRIM28-202ENST00000341753 PHOSPHO2Q8TCD6 241 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 GAL3ST3Q96A11 431 aa20.47■□□□□ 0.87
TRIM28-202ENST00000341753 UBE2QL1A1L167 161 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 OR6C68A6NDL8 312 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 LINC01565O15544 149 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 MAS1P04201 325 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 OR8G3PP0DMU2 310 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 MAT1AQ00266 395 aaKnown RBP20.46■□□□□ 0.87
TRIM28-202ENST00000341753 SORDQ00796 357 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 C11orf88Q6PI97 169 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 ZNF511Q8NB15 262 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 TMEM52Q8NDY8 209 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 OR4C16Q8NGL9 310 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 HAVCR1Q96D42 359 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 TEX101Q9BY14 249 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 SNRPGP15A8MWD9 76 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 H0YC42 278 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 SDC3O75056 442 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 ITGA10O75578 1167 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 CT62P0C5K7 136 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 NDUFAF6Q330K2 333 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 STAC2Q6ZMT1 411 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 POMGNT2Q8NAT1 580 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 OR14A16Q8NHC5 309 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 OR14C36Q8NHC7 312 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 RAB7BQ96AH8 199 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 MRPS24Q96EL2 167 aaKnown RBP20.46■□□□□ 0.87
TRIM28-202ENST00000341753 Q96M85 177 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 TSSK2Q96PF2 358 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 KCNK15Q9H427 330 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 TCF7L1Q9HCS4 588 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 MED9Q9NWA0 146 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 MED11Q9P086 117 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 DPP7Q9UHL4 492 aa20.46■□□□□ 0.87
TRIM28-202ENST00000341753 C19orf53Q9UNZ5 99 aaPredicted RBP20.46■□□□□ 0.87
TRIM28-202ENST00000341753 F5H5P2 479 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 SLC31A1O15431 190 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 CBX7O95931 251 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 IL5P05113 134 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 GDI1P31150 447 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 CAPZA2P47755 286 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 FNTBP49356 437 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 CMTM3Q96MX0 182 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 MFRPQ9BY79 579 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 CHST6Q9GZX3 395 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 MRPS2Q9Y399 296 aaKnown RBP20.45■□□□□ 0.86
TRIM28-202ENST00000341753 KNL1Q8NG31 2342 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 DOCK8Q8NF50 2099 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 FGF17O60258 216 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 DIO1P49895 249 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 ERVK-25P63136 954 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 DEFA5Q01523 94 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 SLC36A1Q7Z2H8 476 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 OR8S1Q8NH09 359 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 TNFAIP8L1Q8WVP5 186 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 FGF14Q92915 247 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 DVL3Q92997 716 aaPredicted RBP20.45■□□□□ 0.86
TRIM28-202ENST00000341753 EVA1AQ9H8M9 152 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 SERTAD3Q9UJW9 196 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 RABL2BQ9UNT1 228 aa20.45■□□□□ 0.86
TRIM28-202ENST00000341753 YBX2Q9Y2T7 364 aaKnown RBP20.45■□□□□ 0.86
TRIM28-202ENST00000341753 EML2O95834 649 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 SPI1P17947 270 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 TSFMP43897 325 aaKnown RBP20.44■□□□□ 0.86
TRIM28-202ENST00000341753 FHL5Q5TD97 284 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 B3GNTL1Q67FW5 361 aaPredicted RBP20.44■□□□□ 0.86
TRIM28-202ENST00000341753 PARM1Q6UWI2 310 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 BOLLQ8N9W6 283 aaKnown RBP20.44■□□□□ 0.86
TRIM28-202ENST00000341753 OR2AK2Q8NG84 335 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 OR5T3Q8NGG3 340 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 RAB11FIP5Q9BXF6 653 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 SPEGQ15772 3267 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 TMEM272A0A1B0GTI8 110 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 OR6C74A6NCV1 312 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 FAM74A7A6NL05 159 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 NDUFB2O95178 105 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 FAM74A3Q4VXF1 159 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 CDH26Q8IXH8 852 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 YAF2Q8IY57 180 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 OR4N2Q8NGD1 307 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 SFXN1Q9H9B4 322 aa20.44■□□□□ 0.86
TRIM28-202ENST00000341753 A0A1W2PQU0 124 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 D6RAR5 112 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 IL10RAQ13651 578 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 DND1Q8IYX4 353 aaKnown RBP20.43■□□□□ 0.86
TRIM28-202ENST00000341753 LCN9Q8WX39 176 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 RNF166Q96A37 237 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-202ENST00000341753 MIB2Q96AX9 1013 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 MFFQ9GZY8 342 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 RSPH9Q9H1X1 276 aaPredicted RBP20.43■□□□□ 0.86
TRIM28-202ENST00000341753 DAPP1Q9UN19 280 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 KLHDC2Q9Y2U9 406 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 GPRIN2O60269 458 aa20.43■□□□□ 0.86
TRIM28-202ENST00000341753 CEACAM5P06731 702 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms