RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ARSDP51689 593 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 REEP5Q00765 189 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 EXOSC6Q5RKV6 272 aaKnown RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 PAMR1Q6UXH9 720 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 ZNF627Q7L945 461 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 ANKRD53Q8N9V6 530 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 HDAC2Q92769 488 aaKnown RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 RDH5Q92781 318 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 CCM2LQ9NUG4 571 aaPredicted RBP7.66□□□□□ -1.18
HMGB1-203ENST00000341423 ACSL6Q9UKU0 697 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 TESMINQ9Y4I5 508 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 AUP1Q9Y679 476 aa7.66□□□□□ -1.18
HMGB1-203ENST00000341423 NDUFB2O95178 105 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 CELA2BP08218 269 aaPredicted RBP7.65□□□□□ -1.18
HMGB1-203ENST00000341423 FPR3P25089 353 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 RAB1AP62820 205 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 ROR2Q01974 943 aaKnown RBP7.65□□□□□ -1.18
HMGB1-203ENST00000341423 EMX1Q04741 257 aaPredicted RBP7.65□□□□□ -1.18
HMGB1-203ENST00000341423 STEAP4Q687X5 459 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 H1FNTQ75WM6 255 aaPredicted RBP7.65□□□□□ -1.18
HMGB1-203ENST00000341423 MED30Q96HR3 178 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 WDR55Q9H6Y2 383 aaPredicted RBP7.65□□□□□ -1.18
HMGB1-203ENST00000341423 NINJ2Q9NZG7 142 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 BAIAP2Q9UQB8 552 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 SEC16AO15027 2179 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 SCGNO76038 276 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 SIX3O95343 332 aaPredicted RBP7.65□□□□□ -1.18
HMGB1-203ENST00000341423 GABRA5P31644 462 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 CCR7P32248 378 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 NOVP48745 357 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 CATR1Q13166 79 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 LEG1Q6P5S2 330 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 OR5J2Q8NH18 312 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 MYDGFQ969H8 173 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 R3HDM4Q96D70 268 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 TVP23BQ9NYZ1 205 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 HRH3Q9Y5N1 445 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 A0A1W2PR80 420 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 MPZL2O60487 215 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 IFNA21P01568 189 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 NSUN5P1Q3KNT7 163 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 SOHLH1Q5JUK2 328 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 OR52W1Q6IF63 320 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 FAM214BQ7L5A3 538 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 LSRQ86X29 649 aaPredicted RBP7.65□□□□□ -1.18
HMGB1-203ENST00000341423 NPEPL1Q8NDH3 523 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 OR10D3Q8NH80 312 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 GIMAP5Q96F15 307 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 SLC41A2Q96JW4 573 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 SIGLEC10Q96LC7 697 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 WWTR1Q9GZV5 400 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 DAPP1Q9UN19 280 aa7.65□□□□□ -1.18
HMGB1-203ENST00000341423 TEX13DA0A0J9YY54 714 aaPredicted RBP7.65□□□□□ -1.19
HMGB1-203ENST00000341423 UNC119BA6NIH7 251 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 ETV5P41161 510 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 HBA1P69905 142 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 CASP8Q14790 479 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 C6orf183Q5T699 404 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 TRIQKQ629K1 86 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 ZBTB49Q6ZSB9 765 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 SLC35D2Q76EJ3 337 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 OR2T27Q8NH04 317 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 ACOT12Q8WYK0 555 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 ATP6V1G3Q96LB4 118 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 PHOX2BQ99453 314 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 TUBA8Q9NY65 449 aaPredicted RBP7.65□□□□□ -1.19
HMGB1-203ENST00000341423 KLHL21Q9UJP4 597 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 A0A1W2PNR3 127 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 OR7A10O76100 309 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 MMP15P51511 669 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 PGGT1BP53609 377 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 GUCA2AQ02747 115 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 KCTD21Q4G0X4 260 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 LAMTOR1Q6IAA8 161 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 FAM111BQ6SJ93 734 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 PRDM7Q9NQW5 492 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 DAPK2Q9UIK4 370 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 CDH10Q9Y6N8 788 aa7.65□□□□□ -1.19
HMGB1-203ENST00000341423 MCRIP1C9JLW8 97 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 MPZL1O95297 269 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 PSMB9P28065 219 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 RPP30P78346 268 aaKnown RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 TPBGQ13641 420 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF789Q5FWF6 425 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 SPANXN2Q5MJ10 180 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 WDR31Q8NA23 367 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 FNDC9Q8TBE3 224 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 POC1BQ8TC44 478 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 ATG101Q9BSB4 218 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 PRDM14Q9GZV8 571 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 BEX4Q9NWD9 120 aaPredicted RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 EFCAB10A6NFE3 127 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 CXCR6O00574 342 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 LIM2P55344 173 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 BTG2P78543 158 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 KLF10Q13118 480 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF468Q5VIY5 522 aaPredicted RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 ZNF57Q68EA5 555 aaPredicted RBP7.64□□□□□ -1.19
HMGB1-203ENST00000341423 NEIL3Q8TAT5 605 aa7.64□□□□□ -1.19
HMGB1-203ENST00000341423 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms