RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PDCD2LQ9BRP1 358 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 SLC17A9Q9BYT1 436 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 ADGRL4Q9HBW9 690 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 CSNK1G1Q9HCP0 422 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF302Q9NR11 478 aa3.84□□□□□ -1.79
NEDD4-201ENST00000338963 FAM212BQ9NTI7 297 aaPredicted RBP3.84□□□□□ -1.79
NEDD4-201ENST00000338963 COLQQ9Y215 455 aaPredicted RBP3.84□□□□□ -1.79
NEDD4-201ENST00000338963 TSPOAP1O95153 1857 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF705FA8MVS1 300 aaPredicted RBP3.84□□□□□ -1.8
NEDD4-201ENST00000338963 UMAD1C9J7I0 102 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 HPXP02790 462 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 CD74P04233 296 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 IL6RP08887 468 aaPredicted RBP3.84□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF705DP0CH99 300 aaPredicted RBP3.84□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF705BP0CI00 300 aaPredicted RBP3.84□□□□□ -1.8
NEDD4-201ENST00000338963 STAG3L2P0CL84 134 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 AKAIN1P0CW23 69 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 ELNP15502 786 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 CD1DP15813 335 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 FDXRP22570 491 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 PSMB4P28070 264 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 SLC6A9P48067 706 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 UBE2KP61086 200 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 PNRC1Q12796 327 aaPredicted RBP3.84□□□□□ -1.8
NEDD4-201ENST00000338963 TSTA3Q13630 321 aaPredicted RBP3.84□□□□□ -1.8
NEDD4-201ENST00000338963 HYAL4Q2M3T9 481 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 SLC36A2Q495M3 483 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 TMEM41BQ5BJD5 291 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 SOHLH1Q5JUK2 328 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 OPN5Q6U736 354 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF516Q92618 1163 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 P2RY11Q96G91 374 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 SLC35E1Q96K37 410 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 WDR92Q96MX6 357 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 ATP6V0BQ99437 205 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 SLCO5A1Q9H2Y9 848 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 MFSD1Q9H3U5 465 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 SEMA4BQ9NPR2 832 aaPredicted RBP3.84□□□□□ -1.8
NEDD4-201ENST00000338963 FKBP11Q9NYL4 201 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF107Q9UII5 783 aaPredicted RBP3.84□□□□□ -1.8
NEDD4-201ENST00000338963 RCE1Q9Y256 329 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 KIF20BQ96Q89 1820 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 RREB1Q92766 1687 aa3.84□□□□□ -1.8
NEDD4-201ENST00000338963 NPIPA5A0A0B4J1W7 369 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 KLRG2A4D1S0 409 aaPredicted RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 NPIPA5E9PKD4 350 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 NPIPA3F8WFD2 350 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 EIF4E2O60573 245 aaKnown RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 CLDN11O75508 207 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 ICAM1P05362 532 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 HLA-DQB2P05538 268 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 NPSP0C0P6 89 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 CALCBP10092 127 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 ARL3P36405 182 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 RPL29P47914 159 aaKnown RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 CCR8P51685 355 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 SH3BP2P78314 561 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 EFNB1P98172 346 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 SLC6A3Q01959 620 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 MRPL49Q13405 166 aaKnown RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 LASP1Q14847 261 aaKnown RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 SHHQ15465 462 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 TEAD2Q15562 447 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 AMHR2Q16671 573 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 HNRNPA1L2Q32P51 320 aaKnown RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 FAM83HQ6ZRV2 1179 aaPredicted RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 COLCA1Q6ZS62 124 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 PIM3Q86V86 326 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 SLC26A10Q8NG04 563 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 OR6N1Q8NGY5 312 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 JOSD2Q8TAC2 188 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 KIF12Q96FN5 646 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 OR8B4Q96RC9 309 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 SNRNP25Q9BV90 132 aaKnown RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 SSBP4Q9BWG4 385 aaPredicted RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 OR11A1Q9GZK7 315 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 POLR2J3Q9H1A7 115 aaKnown RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 COPS7AQ9UBW8 275 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 KCNG2Q9UJ96 466 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 NPIPA1Q9UND3 350 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 ETV7Q9Y603 341 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 H3BN98 237 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 RFXANKO14593 260 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 SNHG28P0DPA3 235 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 CSNK2A2P19784 350 aaPredicted RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 FCARP24071 287 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 EPHA8P29322 1005 aaPredicted RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 CHI3L1P36222 383 aaPredicted RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 KIR3DL1P43629 444 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 GABRA2P47869 451 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 RABGGTBP53611 331 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 OC90Q02509 493 aaPredicted RBP3.83□□□□□ -1.8
NEDD4-201ENST00000338963 ENPP2Q13822 863 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 ZNF774Q6NX45 483 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 IL27RAQ6UWB1 636 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 GALNT16Q8N428 558 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 ARSGQ96EG1 525 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 TRIB3Q96RU7 358 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 COPS8Q99627 209 aa3.83□□□□□ -1.8
NEDD4-201ENST00000338963 NAA11Q9BSU3 229 aaPredicted RBP3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms