RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 LIPT2A6NK58 231 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 G3V3Y1 287 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 GYPBP06028 91 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 ATP6V1E1P36543 226 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 CLK1P49759 484 aaKnown RBP13.93□□□□□ -0.18
LIMS1-202ENST00000338045 FOXK1P85037 733 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 DBPQ10586 325 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-202ENST00000338045 POU4F2Q12837 409 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 MLLT11Q13015 90 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-202ENST00000338045 KRR1Q13601 381 aaKnown RBP13.93□□□□□ -0.18
LIMS1-202ENST00000338045 C1DQ13901 141 aaKnown RBP13.93□□□□□ -0.18
LIMS1-202ENST00000338045 RTP5Q14D33 572 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 MESTQ5EB52 335 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 SLC35D3Q5M8T2 416 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 EXD3Q8N9H8 876 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 CLEC1AQ8NC01 280 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 OR9Q1Q8NGQ5 310 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 ZPLD1Q8TCW7 415 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 ADGRL4Q9HBW9 690 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 FANCFQ9NPI8 374 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 ERVK13-1Q9NX77 482 aa13.93□□□□□ -0.18
LIMS1-202ENST00000338045 ZNF346Q9UL40 294 aaKnown RBP13.93□□□□□ -0.18
LIMS1-202ENST00000338045 A0A0G2JMM0 328 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 A0A1W2PPB8 328 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 A0A1W2PRS3 328 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 KIR3DP1A8MWS1 328 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 H3BML4 177 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 CDK2AP1O14519 115 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 ZIC3O60481 467 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 SBK2P0C263 348 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 HSMCR30P0CW71 290 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 ITGA3P26006 1051 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 CD96P40200 585 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 DNASE1L1P49184 302 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 WNT4P56705 351 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 RPS7P62081 194 aaKnown RBP13.92□□□□□ -0.18
LIMS1-202ENST00000338045 LGALS3BPQ08380 585 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 MYBPHQ13203 477 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 AQP6Q13520 282 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 OR7A5Q15622 319 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 LEG1Q6P5S2 330 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 H1FNTQ75WM6 255 aaPredicted RBP13.92□□□□□ -0.18
LIMS1-202ENST00000338045 JAZF1Q86VZ6 243 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 ACBD7Q8N6N7 88 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 ARIH2OSQ8N7S6 290 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 ATP6V1C2Q8NEY4 427 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 OR5M1Q8NGP8 315 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 ISYNA1Q9NPH2 558 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 INPP5EQ9NRR6 644 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 ASB6Q9NWX5 421 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 ALKBH4Q9NXW9 302 aa13.92□□□□□ -0.18
LIMS1-202ENST00000338045 A0A1W2PPW3 197 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 C11orf98E9PRG8 122 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 MS4A18H0YCH9 400 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 CCRL2O00421 344 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 RNF13O43567 381 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 NEURL1O76050 574 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 OR6A2O95222 327 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 TFPIP10646 304 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 ZNF17P17021 662 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 SPI1P17947 270 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 NR4A1P22736 598 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 DIO1P49895 249 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 SLC16A1P53985 500 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 SOX8P57073 446 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 RPL27P61353 136 aaKnown RBP13.91□□□□□ -0.18
LIMS1-202ENST00000338045 OC90Q02509 493 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-202ENST00000338045 PUDPQ08623 228 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 NFATC3Q12968 1075 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 LSAMPQ13449 338 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 SSX1Q16384 188 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 MS4A18Q3C1V0 323 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 OR2G6Q5TZ20 316 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 TUBA3EQ6PEY2 450 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 LHFPL3Q86UP9 236 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 ATCAYQ86WG3 371 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 OR52N1Q8NH53 320 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 ZNF519Q8TB69 540 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 NXPE2Q96DL1 559 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 SNX18Q96RF0 628 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 UBL7Q96S82 380 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-202ENST00000338045 TXNIPQ9H3M7 391 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 CHST11Q9NPF2 352 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 DEPPQ9NTK1 212 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 LRFN1Q9P244 771 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 ABI3Q9P2A4 366 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 B3GALT5Q9Y2C3 310 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 HDGFL3Q9Y3E1 203 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 N6AMT1Q9Y5N5 214 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 NPIPB13A6NJU9 1138 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 LRRC3CA6NJW4 275 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 C12orf71A8MTZ7 269 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 NPIPB4C9JG80 1138 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 SLC22A1O15245 554 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 CNR1P21554 472 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 AHCYP23526 432 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 SRD5A2P31213 254 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 SH3BGRP55822 239 aaPredicted RBP13.91□□□□□ -0.18
LIMS1-202ENST00000338045 PON3Q15166 354 aa13.91□□□□□ -0.18
LIMS1-202ENST00000338045 ACKR1Q16570 336 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms