RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 PRKAR1BP31321 381 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 MECP2P51608 486 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 RPS27AP62979 156 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 UBA52P62987 128 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 TEAD2Q15562 447 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 BIVMQ86UB2 503 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 TMPRSS12Q86WS5 348 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 ZPLD1Q8TCW7 415 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 MICU1Q9BPX6 476 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 ADAM18Q9Y3Q7 739 aa12.32□□□□□ -0.44
CCDC88C-201ENST00000331194 IGKV1-8A0A0C4DH67 115 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 OR5H14A6NHG9 310 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 EMC8O43402 210 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 FADS1O60427 444 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 HIST1H1CP16403 213 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 ZNF3P17036 446 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 PDZK1IP1Q13113 114 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 SLC9A5Q14940 896 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 AMZ1Q400G9 498 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 ETV3LQ6ZN32 361 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 ACOT4Q8N9L9 421 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 OR6K6Q8NGW6 343 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 ZNF285Q96NJ3 590 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 TRPV4Q9HBA0 871 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 MKL2Q9ULH7 1088 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 KANTRA0A1W2PQU2 76 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 KPNA3O00505 521 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 GRM6O15303 877 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 LATO43561 262 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 ICOSLGO75144 302 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 CSF2RBP32927 897 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 CSNK1G2P78368 415 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 HTRA4P83105 476 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 STAC2Q6ZMT1 411 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 SLC35F2Q8IXU6 374 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 LINC01555Q8NAE3 123 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 OR7G2Q8NG99 324 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 Q96M85 177 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 RBM14Q96PK6 669 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 SPSB2Q99619 263 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 NCDNQ9UBB6 729 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 FAM96BQ9Y3D0 163 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 THSD7BQ9C0I4 1608 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 GLSO94925 669 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 RCBTB2O95199 551 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 LATS1O95835 1130 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 AKR1C3P42330 323 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 GPR1P46091 355 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 ELAVL2Q12926 359 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 SNTB1Q13884 538 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 RBM39Q14498 530 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 UNQ9370/PRO34162Q6UXP9 181 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 STEAP2Q8NFT2 490 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 OR56A1Q8NGH5 318 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 OR52A5Q9H2C5 316 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 APMAPQ9HDC9 416 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 SAGE1Q9NXZ1 904 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 SPHK1Q9NYA1 384 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 KCNE5Q9UJ90 142 aa12.31□□□□□ -0.44
CCDC88C-201ENST00000331194 LOC100509620A0A075B734 347 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 A0A1W2PPV9 198 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 A0A1W2PRU2 124 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 TRAPPC13A5PLN9 417 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 M0QYG6 137 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 ABLIM3O94929 683 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 CSN2P05814 226 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 CSNK2A2P19784 350 aaPredicted RBP12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 PTAFRP25105 342 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 ST8SIA6P61647 398 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 MICBQ29980 383 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 RPL22L1Q6P5R6 122 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 ADIPOR2Q86V24 386 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 DND1Q8IYX4 353 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 CAMKVQ8NCB2 501 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 MIB2Q96AX9 1013 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 MRPL48Q96GC5 212 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 CACYBPQ9HB71 228 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 CAPN10Q9HC96 672 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 MRPS30Q9NP92 439 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 CPED1A4D0V7 1026 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 RNF222A6NCQ9 220 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 H7C417 338 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 LEFTY2O00292 366 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 CTNSO60931 367 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 CAPZA1P52907 286 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 ATP1B3P54709 279 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 REEP5Q00765 189 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 ID2Q02363 134 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 LTBQ06643 244 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 KRT33BQ14525 404 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 DUSP5Q16690 384 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 MRPL2Q5T653 305 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 OTPQ5XKR4 325 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 PARS2Q7L3T8 475 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 OR10AC1Q8NH08 325 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 TRMT2BQ96GJ1 504 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 PTCHD1Q96NR3 888 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 PIGMQ9H3S5 423 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 MTFP1Q9UDX5 166 aa12.3□□□□□ -0.44
CCDC88C-201ENST00000331194 ZNF629Q9UEG4 869 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms