RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 B4GALT6Q9UBX8 382 aa13.32□□□□□ -0.28
COL7A1-201ENST00000328333 CACNA1GO43497 2377 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 HOXB5P09067 269 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 CALCBP10092 127 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 ADRA2CP18825 462 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 ITGB8P26012 769 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 FAM69BQ5VUD6 431 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 MISPQ8IVT2 679 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 A0A0U1RQF3 1178 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 F5H5K5 113 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 T-ENOLP0DO92 83 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 NPY5RQ15761 445 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 ABLIM2Q6H8Q1 611 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 STEAP1BQ6NZ63 245 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 CBLL1Q75N03 491 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 FCRLAQ7L513 359 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 HHIPL1Q96JK4 782 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 ABHD6Q9BV23 337 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 OLAHQ9NV23 265 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 IER3IP1Q9Y5U9 82 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 OR5H15A6NDH6 313 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 OR5H14A6NHG9 310 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 OR5H1A6NKK0 313 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 GCAP28676 217 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 SFT2D1Q8WV19 159 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 TMEM106AQ96A25 262 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 VAMP8Q9BV40 100 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 RBM24Q9BX46 236 aaKnown RBP13.31□□□□□ -0.28
COL7A1-201ENST00000328333 KCNK12Q9HB15 430 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 NDUFB11Q9NX14 153 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 MCRIP1C9JLW8 97 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 M0R3H8 397 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 CLDN1O95832 211 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 TPPP2P59282 170 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 SLC35D3Q5M8T2 416 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 ZNF684Q5T5D7 378 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 LETMD1Q6P1Q0 360 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 ADIPOR2Q86V24 386 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 SIAH3Q8IW03 269 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 C11orf54Q9H0W9 315 aaPredicted RBP13.31□□□□□ -0.28
COL7A1-201ENST00000328333 OR52A1Q9UKL2 312 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 YY2O15391 372 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 CD53P19397 219 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 SERPINA2P20848 420 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 GAB1Q13480 694 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 AGBL4Q5VU57 503 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 PIWIL3Q7Z3Z3 882 aaKnown RBP13.31□□□□□ -0.28
COL7A1-201ENST00000328333 BPHLQ86WA6 291 aaPredicted RBP13.31□□□□□ -0.28
COL7A1-201ENST00000328333 CREB3L4Q8TEY5 395 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 SLC6A18Q96N87 628 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 ANKUB1A6NFN9 424 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 FLT3LGP49771 235 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 CLDN10P78369 228 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 RPS26P11Q5JNZ5 115 aaPredicted RBP13.31□□□□□ -0.28
COL7A1-201ENST00000328333 PRAMEF19Q5SWL8 479 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 SLC38A6Q8IZM9 456 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 CPXM2Q8N436 756 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 PLEKHA2Q9HB19 425 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 SYT5O00445 386 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 IL1RNP18510 177 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 MSX1P28360 303 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 WASP42768 502 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 BAXQ07812 192 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 LPAR4Q99677 370 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 SOX7Q9BT81 388 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 GLIS2Q9BZE0 524 aaPredicted RBP13.31□□□□□ -0.28
COL7A1-201ENST00000328333 WDR76Q9H967 626 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 PLAGL1Q9UM63 463 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 INSL5Q9Y5Q6 135 aa13.31□□□□□ -0.28
COL7A1-201ENST00000328333 YLPM1P49750 1951 aaKnown RBP13.3□□□□□ -0.28
COL7A1-201ENST00000328333 A0A1B0GVG6 124 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 SUB1P53999 127 aaKnown RBP eCLIP13.3□□□□□ -0.28
COL7A1-201ENST00000328333 ID2Q02363 134 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 RAB33AQ14088 237 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 CDHR3Q6ZTQ4 885 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 CATSPERDQ86XM0 798 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 ALOXE3Q9BYJ1 711 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 ENKD1Q9H0I2 346 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 SLC35D1Q9NTN3 355 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 NDRG2Q9UN36 371 aaKnown RBP13.3□□□□□ -0.28
COL7A1-201ENST00000328333 ZNF443Q9Y2A4 671 aaPredicted RBP13.3□□□□□ -0.28
COL7A1-201ENST00000328333 RHBDD3Q9Y3P4 386 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 A0A1B0GUH1 482 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 M0QZK8 103 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 GGCTO75223 188 aaKnown RBP13.3□□□□□ -0.28
COL7A1-201ENST00000328333 CBLP22681 906 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 REEP5Q00765 189 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 TNFRSF17Q02223 184 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 KCTD11Q693B1 232 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 FRMPD2BQ6IN97 320 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 IKZF4Q9H2S9 585 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 SPACA1Q9HBV2 294 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 ZBTB37Q5TC79 503 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 C18orf63Q68DL7 685 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 TMEM71Q6P5X7 295 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 PRAMEF27A3QJZ7 478 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 TAS2R45P59539 299 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 ADPRMQ3LIE5 342 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 PRAMEF9Q5VWM5 478 aa13.3□□□□□ -0.28
COL7A1-201ENST00000328333 OR51A2Q8NGJ7 313 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms