RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SNTB1Q13884 538 aaKnown RBP4.89□□□□□ -1.63
SCN1A-201ENST00000303395 CNN3Q15417 329 aaKnown RBP4.89□□□□□ -1.63
SCN1A-201ENST00000303395 CYP27C1Q4G0S4 372 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 LIPKQ5VXJ0 399 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 IL20RBQ6UXL0 311 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 DBX2Q6ZNG2 339 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 OR2W3Q7Z3T1 314 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 IGDCC3Q8IVU1 814 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 CREB3L4Q8TEY5 395 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 LCORQ96JN0 433 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-201ENST00000303395 CPA4Q9UI42 421 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 RAB22AQ9UL26 194 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 KCNK7Q9Y2U2 307 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 CACNA1IQ9P0X4 2223 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 ABCA7Q8IZY2 2146 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 LOC102723971A0A1B0GUV8 181 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 TCRBV5S2A0A599 114 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 OR5K3A6NET4 321 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 C17orf112F2Z3M2 114 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 RPP14O95059 124 aaKnown RBP4.89□□□□□ -1.63
SCN1A-201ENST00000303395 HAPLN1P10915 354 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-201ENST00000303395 BPIP17213 487 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 ANXA7P20073 488 aaKnown RBP4.89□□□□□ -1.63
SCN1A-201ENST00000303395 MAGP20916 626 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 CDKN1CP49918 316 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-201ENST00000303395 AQP6Q13520 282 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 FAM69BQ5VUD6 431 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 OR4F3Q6IEY1 312 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 MBOAT2Q6ZWT7 520 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM150AQ86TG1 271 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 ARL6IP6Q8N6S5 226 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 FAM181AQ8N9Y4 354 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 GRHL3Q8TE85 626 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 DVL3Q92997 716 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-201ENST00000303395 WDR34Q96EX3 536 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 PBX4Q9BYU1 374 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 NSUN3Q9H649 340 aaKnown RBP4.89□□□□□ -1.63
SCN1A-201ENST00000303395 SACM1LQ9NTJ5 587 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 C2orf42Q9NWW7 574 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 TMED3Q9Y3Q3 217 aa4.89□□□□□ -1.63
SCN1A-201ENST00000303395 RFXAPO00287 272 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 CLIC3O95833 236 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 ADRA2CP18825 462 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 HOXD11P31277 338 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 FNTBP49356 437 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 PTTG1IPP53801 180 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 MLLT10P55197 1068 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 TRMT12Q53H54 448 aaKnown RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 SFXN4Q6P4A7 337 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 C22orf39Q6P5X5 142 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF534Q76KX8 674 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 RBM23Q86U06 439 aaKnown RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 CCDC116Q8IYX3 515 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 CNIH3Q8TBE1 160 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 EMG1Q92979 244 aaKnown RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 MMABQ96EY8 250 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 PEBP4Q96S96 227 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 HBEGFQ99075 208 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 CNTNAP3Q9BZ76 1288 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 NSG1A0A0A6YYJ2 146 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 KIR2DS1A0A191URI9 304 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 GAPDHP04406 335 aaKnown RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 BDKRB2P30411 391 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 KIR2DS4P43632 304 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF252P-AS1Q0IIN9 211 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 KIR2DS1Q14954 304 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 SPRED3Q2MJR0 410 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF695Q8IW36 515 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 KLHDC8AQ8IYD2 350 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 GALNT16Q8N428 558 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 GPR78Q96P69 363 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 DPCDQ9BVM2 203 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 BET1LQ9NYM9 111 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 GALPQ9UBC7 116 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 TIMM22Q9Y584 194 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 XKRY2A2RUG3 117 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 FXYD1O00168 92 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 TPST2O60704 377 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 USP2O75604 605 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 ORM1P02763 201 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 CT45A10P0DMU9 189 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 PTAFRP25105 342 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 COTL1Q14019 142 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 BCL2L15Q5TBC7 163 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF425Q6IV72 752 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 PODNL1Q6PEZ8 512 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 CPNE8Q86YQ8 564 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 FBXO16Q8IX29 292 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 OR4N2Q8NGD1 307 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 OR5H2Q8NGV7 314 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 OR8U1Q8NH10 309 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 LKAAEAR1Q8TD35 194 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 PXYLP1Q8TE99 480 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 SLC25A43Q8WUT9 341 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 LIPHQ8WWY8 451 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 RAB24Q969Q5 203 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 FAM46AQ96IP4 442 aaKnown RBP4.88□□□□□ -1.63
SCN1A-201ENST00000303395 SEC11CQ9BY50 192 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 TM6SF2Q9BZW4 377 aa4.88□□□□□ -1.63
SCN1A-201ENST00000303395 ABCG8Q9H221 673 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms