RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 TMED6Q8WW62 240 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 BPIFA2Q96DR5 249 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 UTP23Q9BRU9 249 aaKnown RBP12.34□□□□□ -0.43
SKA3-201ENST00000298260 ULBP3Q9BZM4 244 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 ZDHHC5Q9C0B5 715 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 XKR8Q9H6D3 395 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 APMAPQ9HDC9 416 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 SNRNP200O75643 2136 aaKnown RBP12.34□□□□□ -0.43
SKA3-201ENST00000298260 TRAV18A0A075B6X5 111 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 PMS2P1A4D2B8 440 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 OR2AT4A6NND4 320 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 RAD1O60671 282 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 CKBP12277 381 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 SMCO1Q147U7 214 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 NR0B2Q15466 257 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 FRRS1Q6ZNA5 592 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 RHOUQ7L0Q8 258 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 DEFB128Q7Z7B8 93 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 OR51D1Q8NGF3 324 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 PPP1R1CQ8WVI7 109 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 TMEM239Q8WW34 195 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 Q96M85 177 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 ZNF285Q96NJ3 590 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 TRPV4Q9HBA0 871 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 CAPN10Q9HC96 672 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 SIGLEC7Q9Y286 467 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 FRMPD3Q5JV73 1810 aa12.34□□□□□ -0.43
SKA3-201ENST00000298260 TRAV8-7A0A075B6U6 113 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 A0A0A6YYC8 382 aaPredicted RBP12.33□□□□□ -0.43
SKA3-201ENST00000298260 A0A1B0GW55 424 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 OR14I1A6ND48 311 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 ZNF879B4DU55 563 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 I3L1I5 382 aaPredicted RBP12.33□□□□□ -0.43
SKA3-201ENST00000298260 PEX12O00623 359 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 YKT6O15498 198 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 LATS1O95835 1130 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 IFNA4P05014 189 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 KLK3P07288 261 aaPredicted RBP12.33□□□□□ -0.43
SKA3-201ENST00000298260 CTSLP07711 333 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 OR4E1P0C645 316 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 DUX4L2P0CJ85 424 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 DUX4L3P0CJ86 424 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 DUX4L4P0CJ87 422 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 DUX4L5P0CJ88 424 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 DUX4L6P0CJ89 424 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 DUX4L7P0CJ90 424 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 ZNF44P15621 663 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 AQP2P41181 271 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 CLINT1Q14677 625 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 OR4C11Q6IEV9 310 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 CDPF1Q6NVV7 123 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 TRAM1L1Q8N609 369 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 ISOC2Q96AB3 205 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 C14orf79Q96F83 325 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 CLCC1Q96S66 551 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 MAP3K3Q99759 626 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 WBP1LQ9NX94 342 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 DUX4Q9UBX2 424 aa12.33□□□□□ -0.43
SKA3-201ENST00000298260 ZNF223Q9UK11 482 aaPredicted RBP12.33□□□□□ -0.43
SKA3-201ENST00000298260 ZNF443Q9Y2A4 671 aaPredicted RBP12.33□□□□□ -0.43
SKA3-201ENST00000298260 CHD9Q3L8U1 2897 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 COLCA2A8K830 154 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 NEDD8-MDP1E9PL57 170 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 GLSO94925 669 aaPredicted RBP12.33□□□□□ -0.44
SKA3-201ENST00000298260 S100A6P06703 90 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 TIMP2P16035 220 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 HIST1H1CP16403 213 aaKnown RBP12.33□□□□□ -0.44
SKA3-201ENST00000298260 CD53P19397 219 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 LTBQ06643 244 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 EIF2S3LQ2VIR3 472 aaKnown RBP12.33□□□□□ -0.44
SKA3-201ENST00000298260 FIGNL1Q6PIW4 674 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 STAC2Q6ZMT1 411 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 Q6ZNB5 142 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 ZNF761Q86XN6 746 aaPredicted RBP12.33□□□□□ -0.44
SKA3-201ENST00000298260 KCNRGQ8N5I3 272 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 OR51A4Q8NGJ6 313 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 PAPOLGQ9BWT3 736 aaKnown RBP12.33□□□□□ -0.44
SKA3-201ENST00000298260 SELENOIQ9C0D9 397 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 HRH4Q9H3N8 390 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 STEAP1Q9UHE8 339 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 TNFSF18Q9UNG2 199 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 FARSAQ9Y285 508 aaKnown RBP12.33□□□□□ -0.44
SKA3-201ENST00000298260 SLC35A3Q9Y2D2 325 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 YIPF1Q9Y548 306 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 CACNA1IQ9P0X4 2223 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 KPNA3O00505 521 aaPredicted RBP12.33□□□□□ -0.44
SKA3-201ENST00000298260 ERI3O43414 337 aaKnown RBP12.33□□□□□ -0.44
SKA3-201ENST00000298260 BCL2L11O43521 198 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 ALOX12BO75342 701 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 ELFN1P0C7U0 828 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 SELLP14151 372 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 DDX6P26196 483 aaKnown RBP eCLIP12.33□□□□□ -0.44
SKA3-201ENST00000298260 CERS1P27544 350 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 RORAP35398 523 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 IRF5Q13568 498 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 ZNF234Q14588 700 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 ELAVL1Q15717 326 aaKnown RBP12.33□□□□□ -0.44
SKA3-201ENST00000298260 GFOD2Q3B7J2 385 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 SCGB2B2Q4G0G5 96 aa12.33□□□□□ -0.44
SKA3-201ENST00000298260 GLT8D1Q68CQ7 371 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms