RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CT45A9P0DMV2 189 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 CR2P20023 1033 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 IDH3GP51553 393 aaPredicted RBP17.72■□□□□ 0.43
UPF1-201ENST00000262803 CT45A2Q5DJT8 189 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 CT45A1Q5HYN5 189 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 CT45A3Q8NHU0 189 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 MCOLN1Q9GZU1 580 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 MFFQ9GZY8 342 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 QRSL1Q9H0R6 528 aaKnown RBP17.72■□□□□ 0.43
UPF1-201ENST00000262803 C1orf123Q9NWV4 160 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 MARCH5Q9NX47 278 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 TRAPPC2LQ9UL33 140 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 TAPBPO15533 448 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 NEURL3Q96EH8 262 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 LRFN5Q96NI6 719 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 MUTYHQ9UIF7 546 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 NDRG4Q9ULP0 352 aaKnown RBP17.72■□□□□ 0.43
UPF1-201ENST00000262803 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.72■□□□□ 0.43
UPF1-201ENST00000262803 MT-ND4P03905 459 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 RAB11AP62491 216 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 NXNL2Q5VZ03 156 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 NDUFAF7Q7L592 441 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 OR13C2Q8NGS9 318 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 SEMA4GQ9NTN9 838 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 EHFQ9NZC4 300 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 KLK4Q9Y5K2 254 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 CACNA1SQ13698 1873 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 SLCO2B1O94956 709 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 CSNK1EP49674 416 aaKnown RBP17.71■□□□□ 0.43
UPF1-201ENST00000262803 VEGFCP49767 419 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 C6orf15Q6UXA7 325 aaPredicted RBP17.71■□□□□ 0.43
UPF1-201ENST00000262803 SLC46A3Q7Z3Q1 461 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 GPR78Q96P69 363 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 KCNJ15Q99712 375 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 CXorf36Q9H7Y0 433 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 TM7SF3Q9NS93 570 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 LINC01553A4QN01 128 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 SNCAP37840 140 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 SLC14A1Q13336 389 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 HBMQ6B0K9 141 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 KCNIP4Q6PIL6 250 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 NRARPQ7Z6K4 114 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 ZNF419Q96HQ0 510 aaPredicted RBP17.71■□□□□ 0.43
UPF1-201ENST00000262803 NDUFAF4Q9P032 175 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 A0A1B0GV50 99 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 F8W036 122 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 SLC16A6O15403 523 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 HBE1P02100 147 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 HBG1P69891 147 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 HBG2P69892 147 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 PKD1L3Q7Z443 1732 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 ACBD4Q8NC06 268 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 IL1F10Q8WWZ1 152 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 TMEM59Q9BXS4 323 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 SIDT1Q9NXL6 827 aaKnown RBP17.71■□□□□ 0.43
UPF1-201ENST00000262803 PLEKHM1Q9Y4G2 1056 aa17.71■□□□□ 0.43
UPF1-201ENST00000262803 LRIT2A6NDA9 550 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 GABARAPH6UMI1 98 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 GABARAPO95166 117 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 MTCP1P56278 107 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 SMAD4Q13485 552 aaKnown RBP17.7■□□□□ 0.42
UPF1-201ENST00000262803 RUNX2Q13950 521 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 ENTHD1Q8IYW4 607 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 LINC01465Q8N7H1 131 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 DNAJC5GQ8N7S2 189 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 SMAP2Q8WU79 429 aaPredicted RBP17.7■□□□□ 0.42
UPF1-201ENST00000262803 TAS2R16Q9NYV7 291 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 YARS2Q9Y2Z4 477 aaKnown RBP17.7■□□□□ 0.42
UPF1-201ENST00000262803 APOBEC1P41238 236 aaKnown RBP17.7■□□□□ 0.42
UPF1-201ENST00000262803 SLC48A1Q6P1K1 146 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 TBPL2Q6SJ96 375 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 DND1Q8IYX4 353 aaKnown RBP17.7■□□□□ 0.42
UPF1-201ENST00000262803 TMEM38AQ9H6F2 299 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 CCL26Q9Y258 94 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 KDM4EB2RXH2 506 aaPredicted RBP17.7■□□□□ 0.42
UPF1-201ENST00000262803 SERPINA7P05543 415 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 ERVFC1P60507 584 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 OR7E24Q6IFN5 339 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 ZNF679Q8IYX0 411 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 SLC22A24Q8N4F4 322 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 TCTEX1D2Q8WW35 142 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 PPA2Q9H2U2 334 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 NRIP3Q9NQ35 241 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 ASF1BQ9NVP2 202 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 ZNF593O00488 134 aaPredicted RBP17.7■□□□□ 0.42
UPF1-201ENST00000262803 YY2O15391 372 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 RAP2BP61225 183 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 ILKQ13418 452 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 ELAVL1Q15717 326 aaKnown RBP17.7■□□□□ 0.42
UPF1-201ENST00000262803 COX20Q5RI15 118 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 NOX3Q9HBY0 568 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 GPATCH2Q9NW75 528 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 MMP17Q9ULZ9 603 aa17.7■□□□□ 0.42
UPF1-201ENST00000262803 A0A0D9SG52 128 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 GPX2P18283 190 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 SLC1A3P43003 542 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 Q499Y3 187 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 RFPL4BQ6ZWI9 263 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 ALG12Q9BV10 488 aa17.69■□□□□ 0.42
UPF1-201ENST00000262803 BTBD17A6NE02 478 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms