RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 OR2AT4A6NND4 320 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 EEF1E1-BLOC1S5C9J1V9 151 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 CTNSO60931 367 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 LDB3O75112 727 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 GPANK1O95872 356 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 ADRA2CP18825 462 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 LBX1P52954 281 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 DHODHQ02127 395 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 KCTD9Q7L273 389 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 ZNF627Q7L945 461 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 ASPGQ86U10 573 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 CD163Q86VB7 1156 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 NAXDQ8IW45 347 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 GJD3Q8N144 294 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 OR10R2Q8NGX6 335 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 DTD2Q96FN9 168 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 ACTRT3Q9BYD9 372 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 NCDNQ9UBB6 729 aa13.16□□□□□ -0.3
SDC1-201ENST00000254351 ASCC3Q8N3C0 2202 aaKnown RBP13.16□□□□□ -0.3
SDC1-201ENST00000254351 TRAV8-7A0A075B6U6 113 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.15□□□□□ -0.3
SDC1-201ENST00000254351 TMEM72A0PK05 275 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 OR5H14A6NHG9 310 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 LRRC72A6NJI9 287 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 OR6C65A6NJZ3 312 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 GRXCR1A8MXD5 290 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 APOC1P02654 83 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 CCR2P41597 374 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 EXOSC7Q15024 291 aaKnown RBP13.15□□□□□ -0.3
SDC1-201ENST00000254351 PLEKHN1Q494U1 663 aaPredicted RBP13.15□□□□□ -0.3
SDC1-201ENST00000254351 SFTPA1Q8IWL2 248 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 OR1J2Q8NGS2 313 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 RGP1Q92546 391 aaPredicted RBP13.15□□□□□ -0.3
SDC1-201ENST00000254351 LCORQ96JN0 433 aaPredicted RBP13.15□□□□□ -0.3
SDC1-201ENST00000254351 SPSB2Q99619 263 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 TMEM74BQ9NUR3 256 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 KCNE5Q9UJ90 142 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 SNRNP200O75643 2136 aaKnown RBP13.15□□□□□ -0.3
SDC1-201ENST00000254351 C13orf42A0A1B0GVH6 325 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 NAP1L6A6NFF2 107 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 HMSDA8MTL9 139 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 MCIDASD6RGH6 385 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 CSF2RBP32927 897 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 CAPZA1P52907 286 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 EPHA4P54764 986 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 HTRA4P83105 476 aaPredicted RBP13.15□□□□□ -0.3
SDC1-201ENST00000254351 PDZK1IP1Q13113 114 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 SRSF5Q13243 272 aaKnown RBP13.15□□□□□ -0.3
SDC1-201ENST00000254351 PON3Q15166 354 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 TMEM205Q6UW68 189 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 STAC2Q6ZMT1 411 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 SLC36A1Q7Z2H8 476 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 ZAR1Q86SH2 424 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 PM20D2Q8IYS1 436 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 TRPV4Q9HBA0 871 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 SRA1Q9HD15 236 aaKnown RBP13.15□□□□□ -0.3
SDC1-201ENST00000254351 ATG2BQ96BY7 2078 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 DOCK9Q9BZ29 2069 aa13.15□□□□□ -0.3
SDC1-201ENST00000254351 NGFRP08138 427 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 PRKAR1BP31321 381 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 DLSTP36957 453 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 MNX1P50219 401 aaPredicted RBP13.15□□□□□ -0.31
SDC1-201ENST00000254351 ATP1B3P54709 279 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 ELFN2Q5R3F8 820 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 MFSD12Q6NUT3 480 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 DPPA4Q7L190 304 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 OR6K3Q8NGY3 331 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 OR2L2Q8NH16 312 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 RXFP4Q8TDU9 374 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 SFT2D1Q8WV19 159 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 MS4A6EQ96DS6 147 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 TMPRSS13Q9BYE2 586 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 OR2S2Q9NQN1 319 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 BIN3Q9NQY0 253 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 MED9Q9NWA0 146 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 RASL12Q9NYN1 266 aa13.15□□□□□ -0.31
SDC1-201ENST00000254351 A0A1W2PPV9 198 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 SNRPGP15A8MWD9 76 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 TXNL1O43396 289 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 ADAM11O75078 769 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 ACTL6AO96019 429 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 SLC35G4P0C7Q5 338 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 ZNF28P17035 718 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 DEFB134Q4QY38 66 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 OVCH1Q7RTY7 1134 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 C10orf53Q8N6V4 93 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 TRMT2BQ96GJ1 504 aaKnown RBP13.14□□□□□ -0.31
SDC1-201ENST00000254351 C19orf43Q9BQ61 176 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 TTLL8A6PVC2 850 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 BLOC1S5-TXNDC5H3BN57 136 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 CACNB4O00305 520 aaPredicted RBP13.14□□□□□ -0.31
SDC1-201ENST00000254351 LRG1P02750 347 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 FABP1P07148 127 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 ST6GAL1P15907 406 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 AVPR2P30518 371 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 ARFIP1P53367 373 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 ST8SIA6P61647 398 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 OR10K2Q6IF99 312 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 MTSS1LQ765P7 747 aa13.14□□□□□ -0.31
SDC1-201ENST00000254351 ZSCAN1Q8NBB4 408 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms