RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 TSLPQ969D9 159 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 JAM3Q9BX67 310 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 TBCCD1Q9NVR7 557 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 A0A1W2PPV9 198 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 MSR1P21757 451 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 MAP2K3P46734 347 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 AQP6Q13520 282 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 CNOT9Q92600 299 aaKnown RBP12.51□□□□□ -0.41
LDLR-201ENST00000252444 ZC3H10Q96K80 434 aaKnown RBP12.51□□□□□ -0.41
LDLR-201ENST00000252444 TEX37Q96LM6 180 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 TRAV27A0A087WT01 109 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 OTOL1A6NHN0 477 aaPredicted RBP12.51□□□□□ -0.41
LDLR-201ENST00000252444 ACOD1A6NK06 481 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 HRO43593 1189 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 CTSVO60911 334 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 ZNF17P17021 662 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 ARRB2P32121 409 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 CSRP2Q16527 193 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 PERM1Q5SV97 790 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 EIF5AL1Q6IS14 154 aaKnown RBP12.51□□□□□ -0.41
LDLR-201ENST00000252444 ESPNLQ6ZVH7 1005 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 MENTQ9BUN1 341 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 ENAMQ9NRM1 1142 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 MGAT4AQ9UM21 535 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 ANK1P16157 1881 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 PLSCR5A0PG75 271 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 ICOSLGO75144 302 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 SULT1C4O75897 302 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 CD79AP11912 226 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 ERP29P30040 261 aaKnown RBP12.51□□□□□ -0.41
LDLR-201ENST00000252444 ADARB1P78563 741 aaKnown RBP12.51□□□□□ -0.41
LDLR-201ENST00000252444 RHOXF1Q8NHV9 184 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 SEMA4GQ9NTN9 838 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 C14orf119Q9NWQ9 140 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 GHRLQ9UBU3 117 aa12.51□□□□□ -0.41
LDLR-201ENST00000252444 FRS3O43559 492 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 FOLR1P15328 257 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 VWA2Q5GFL6 755 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 GALNT10Q86SR1 603 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 PSD2Q9BQI7 771 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 NUDT9Q9BW91 350 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 RGCCQ9H4X1 137 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 KDM4EB2RXH2 506 aaPredicted RBP12.5□□□□□ -0.41
LDLR-201ENST00000252444 TSPAN9O75954 239 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 LTBRP36941 435 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 HSF1Q00613 529 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 NKG7Q16617 165 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 IQCF1Q8N6M8 205 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 GGHQ92820 318 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 ZMYND19Q96E35 227 aaPredicted RBP12.5□□□□□ -0.41
LDLR-201ENST00000252444 PRMT8Q9NR22 394 aaPredicted RBP12.5□□□□□ -0.41
LDLR-201ENST00000252444 KLF15Q9UIH9 416 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 PROCRQ9UNN8 238 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 IGHV5-10-1A0A0J9YXX1 117 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 SCG5P05408 212 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 SLC25A1P53007 311 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 SLC29A1Q99808 456 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 SPNS1Q9H2V7 528 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 MED11Q9P086 117 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 PCDHGA6Q9Y5G7 932 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 FITM1A5D6W6 292 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 PRKRAO75569 313 aaKnown RBP12.5□□□□□ -0.41
LDLR-201ENST00000252444 GSTT2P0CG29 244 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 ECI1P42126 302 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 FUT7Q11130 342 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 SPARTQ8N0X7 666 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 ARIH2OSQ8N7S6 290 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 ZFP3Q96NJ6 502 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 UBQLN3Q9H347 655 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 P4HTMQ9NXG6 502 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 EXTL2Q9UBQ6 330 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 TIMM10BQ9Y5J6 103 aa12.5□□□□□ -0.41
LDLR-201ENST00000252444 P2RX6O15547 441 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 ACTL6AO96019 429 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 LCKP06239 509 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 ZNF35P13682 527 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 SAP25Q8TEE9 199 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 TNFRSF13CQ96RJ3 184 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 SLC38A1Q9H2H9 487 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 GPATCH2Q9NW75 528 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 QPCTLQ9NXS2 382 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 A0A1W2PPH5 198 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 LRP5LA4QPB2 252 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 ZAR1LA6NP61 321 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 IL2RAP01589 272 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 STARP49675 285 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 BIDP55957 195 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 BTG2P78543 158 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 ZNF684Q5T5D7 378 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 TMEM205Q6UW68 189 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 ZNF793Q6ZN11 406 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 LINC00696Q6ZRV3 163 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 TMPRSS11FQ6ZWK6 438 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 DEFB124Q8NES8 71 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 SYT3Q9BQG1 590 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 NELFAQ9H3P2 528 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 H3BSA7 217 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 XRCC2O43543 280 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 PRAF2O60831 178 aa12.49□□□□□ -0.41
LDLR-201ENST00000252444 EIF2B2P49770 351 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms