RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PRR14Q9BWN1 585 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GAL3ST2Q9H3Q3 398 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SRMSQ9H3Y6 488 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 UCK1Q9HA47 277 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF701Q9NV72 531 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 OR5AC2Q9NZP5 309 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SHPKQ9UHJ6 478 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 MCRIP1C9JLW8 97 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 BLOC1S5-TXNDC5H3BN57 136 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM189-UBE2V1I3L0A0 370 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 KLK8O60259 260 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 DUSP1P28562 367 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 THPOP40225 353 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 KCNJ10P78508 379 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 BTNL3Q6UXE8 466 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM64Q6YI46 380 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 COMMD6Q7Z4G1 85 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 OR4K15Q8NH41 348 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 C16orf78Q8WTQ4 265 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 LRFN3Q9BTN0 628 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 HS3ST4Q9Y661 456 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 A0A1B0GV72 72 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 CD80P33681 288 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 DAP3P51398 398 aaKnown RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 DACT2Q5SW24 774 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SYPL2Q5VXT5 272 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF534Q76KX8 674 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 TRILQ7L0X0 811 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 NUP43Q8NFH3 380 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 OR4B1Q8NGF8 309 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 WDR20Q8TBZ3 569 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ANAPC16Q96DE5 110 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ATF6BQ99941 703 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 TXNDC17Q9BRA2 123 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ANGPTL4Q9BY76 406 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 NMUR1Q9HB89 426 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 OR52A1Q9UKL2 312 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 KCNS2Q9ULS6 477 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 OR6C68A6NDL8 312 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GPR31O00270 319 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 EOMESO95936 686 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SOD1P00441 154 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 FGF2P09038 288 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 AKR1A1P14550 325 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 FOLR1P15328 257 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 NQO2P16083 231 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF140P52738 457 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 PTTG1IPP53801 180 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 KCNAB1Q14722 419 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GGNBP1Q5YKI7 109 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 CNKSR3Q6P9H4 555 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ZSCAN4Q8NAM6 433 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF738Q8NE65 137 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SLC24A4Q8NFF2 622 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 FAM3DQ96BQ1 224 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ZIC5Q96T25 663 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 JAM3Q9BX67 310 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GPR87Q9BY21 358 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SEC61A2Q9H9S3 476 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SMIM30A4D0T7 59 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 OR5H15A6NDH6 313 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 OR5H1A6NKK0 313 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 FXYD1O00168 92 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SURF4O15260 269 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ERI3O43414 337 aaKnown RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 STK17BO94768 372 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 BCKDHBP21953 392 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SOX2P48431 317 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 NPY4RP50391 375 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 FAM3BP58499 235 aaPredicted RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ACVR1Q04771 509 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 SCGB2A2Q13296 93 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GSG1Q2KHT4 349 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 EMC4Q5J8M3 183 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 ENTPD8Q5MY95 495 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 LCN9Q8WX39 176 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GHSRQ92847 366 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 TRMT2BQ96GJ1 504 aaKnown RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 C4orf36Q96KX1 117 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 PIGQQ9BRB3 760 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 BCL2L10Q9HD36 194 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 MRPL17Q9NRX2 175 aaKnown RBP4.34□□□□□ -1.71
SCN1A-220ENST00000641603 PLSCR3Q9NRY6 295 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 GAB2Q9UQC2 676 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 V9GYH0 126 aa4.34□□□□□ -1.71
SCN1A-220ENST00000641603 A8MX80 341 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 SELENOFO60613 162 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 GAPDHP04406 335 aaKnown RBP4.34□□□□□ -1.72
SCN1A-220ENST00000641603 LIMS3P0CW19 117 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 LIMS4P0CW20 117 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 SLC10A2Q12908 348 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-220ENST00000641603 PHOSPHO2Q8TCD6 241 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 CDS1Q92903 461 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 GHRLQ9UBU3 117 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 CLEC3AO75596 197 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 ARRB1P49407 418 aaPredicted RBP4.34□□□□□ -1.72
SCN1A-220ENST00000641603 ERVS71-1P61550 626 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 RPS15AP62244 130 aaKnown RBP4.34□□□□□ -1.72
SCN1A-220ENST00000641603 CARD16Q5EG05 197 aa4.34□□□□□ -1.72
SCN1A-220ENST00000641603 PODNL1Q6PEZ8 512 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms