RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MAKP20794 623 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 SLC16A1P53985 500 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 FHL1Q13642 323 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 TRIM25Q14258 630 aaKnown RBP11.92□□□□□ -0.5
LINC00540-202ENST00000616974 LAPTM4AQ15012 233 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 SWT1Q5T5J6 900 aaKnown RBP11.92□□□□□ -0.5
LINC00540-202ENST00000616974 TSPO2Q5TGU0 170 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 EEF1A1P5Q5VTE0 462 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 TMEM225Q6GV28 225 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 ALKBH2Q6NS38 261 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 PGM2L1Q6PCE3 622 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 NHLRC1Q6VVB1 395 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 NRMQ8IXM6 262 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 TMEM239Q8WW34 195 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 LZICQ8WZA0 190 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 PYURFQ96I23 114 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 TMEM43Q9BTV4 400 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 NMNAT1Q9HAN9 279 aaPredicted RBP11.92□□□□□ -0.5
LINC00540-202ENST00000616974 SLC7A10Q9NS82 523 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 VNN3Q9NY84 501 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 TAS2R5Q9NYW4 299 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 SELENONQ9NZV5 590 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 NOSIPQ9Y314 301 aaKnown RBP11.92□□□□□ -0.5
LINC00540-202ENST00000616974 TESMINQ9Y4I5 508 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 CDC42EP2O14613 210 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 GYG2O15488 501 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 TRAF3IP2O43734 574 aaPredicted RBP11.92□□□□□ -0.5
LINC00540-202ENST00000616974 POU2F1P14859 743 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 UGT2B10P36537 528 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 POU4F3Q15319 338 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 PHYHD1Q5SRE7 291 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 CASP12Q6UXS9 341 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 CREB3L2Q70SY1 520 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 GALNT5Q7Z7M9 940 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 ALKBH3Q96Q83 286 aaPredicted RBP11.92□□□□□ -0.5
LINC00540-202ENST00000616974 GPA33Q99795 319 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 BTBD10Q9BSF8 475 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 CHST11Q9NPF2 352 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 C6orf203Q9P0P8 240 aaPredicted RBP11.92□□□□□ -0.5
LINC00540-202ENST00000616974 ACTR3BQ9P1U1 418 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 ENPP4Q9Y6X5 453 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 DSCAMO60469 2012 aa11.92□□□□□ -0.5
LINC00540-202ENST00000616974 ZNF724A8MTY0 619 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 FZD7O75084 574 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 ADAP00813 363 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 THBDP07204 575 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 ZNF26P17031 533 aaPredicted RBP11.91□□□□□ -0.5
LINC00540-202ENST00000616974 IGHV1-2P23083 117 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 CD79BP40259 229 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 OR3A2P47893 321 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 MAP2K6P52564 334 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 TTC33Q6PID6 262 aaPredicted RBP11.91□□□□□ -0.5
LINC00540-202ENST00000616974 OFCC1Q8IZS5 231 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 MOSPD2Q8NHP6 518 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 PIGXQ8TBF5 258 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 HTRA1Q92743 480 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 PIGMQ9H3S5 423 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 NDE1Q9NXR1 346 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 SLC7A8Q9UHI5 535 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 MTORP42345 2549 aa11.91□□□□□ -0.5
LINC00540-202ENST00000616974 TRAV27A0A087WT01 109 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 PLPP3O14495 311 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 GSC2O15499 205 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 DNPH1O43598 174 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 EIF1BO60739 113 aaKnown RBP11.9□□□□□ -0.5
LINC00540-202ENST00000616974 UPK3AO75631 287 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 F13BP05160 661 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 ASAH2BP0C7U1 165 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 COX6B1P14854 86 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 NQO1P15559 274 aaKnown RBP11.9□□□□□ -0.5
LINC00540-202ENST00000616974 AHCYP23526 432 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 FKBP2P26885 142 aaKnown RBP11.9□□□□□ -0.5
LINC00540-202ENST00000616974 GPR4P46093 362 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 CLDN17P56750 224 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 POU3F1Q03052 451 aaPredicted RBP11.9□□□□□ -0.5
LINC00540-202ENST00000616974 MELKQ14680 651 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 H1FNTQ75WM6 255 aaPredicted RBP11.9□□□□□ -0.5
LINC00540-202ENST00000616974 IGFN1Q86VF2 1251 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 UTP4Q969X6 686 aaKnown RBP11.9□□□□□ -0.5
LINC00540-202ENST00000616974 ZHX1-C8orf76Q96EF9 292 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 GLRX2Q9NS18 164 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 RPS6KA6Q9UK32 745 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 SAMD4AQ9UPU9 718 aaKnown RBP11.9□□□□□ -0.5
LINC00540-202ENST00000616974 PRRC2AP48634 2157 aaKnown RBP11.9□□□□□ -0.5
LINC00540-202ENST00000616974 SEC14L2O76054 403 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 ZNF432O94892 652 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 ITGA5P08648 1049 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 CDH2P19022 906 aaPredicted RBP11.9□□□□□ -0.5
LINC00540-202ENST00000616974 IL1RL1Q01638 556 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 RUNX1T1Q06455 604 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 FAPQ12884 760 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 CARD17Q5XLA6 110 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 LCN8Q6JVE9 175 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 PODNL1Q6PEZ8 512 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 DHFR2Q86XF0 187 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 S100PBPQ96BU1 408 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 MPP4Q96JB8 637 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 FUZQ9BT04 418 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 FNDC11Q9BVV2 318 aa11.9□□□□□ -0.5
LINC00540-202ENST00000616974 LIME1Q9H400 295 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms