RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CSNK1EP49674 416 aaKnown RBP12.96□□□□□ -0.33
CPSF1-212ENST00000616140 CCR6P51684 374 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 CLDN6P56747 220 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 FAPQ12884 760 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 FAM26EQ8N5C1 309 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 STEAP2Q8NFT2 490 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 OR1E3Q8WZA6 343 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 SLC7A6Q92536 515 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 SLC41A2Q96JW4 573 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 KCNJ16Q9NPI9 418 aa12.96□□□□□ -0.33
CPSF1-212ENST00000616140 BTAF1O14981 1849 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 PIGBOS1A0A0B4J2F0 54 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 C1orf196B1AJZ1 125 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 TNFRSF10AO00220 468 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 PRICKLE3O43900 615 aaPredicted RBP12.96□□□□□ -0.34
CPSF1-212ENST00000616140 FCMRO60667 390 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 DPM1O60762 260 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 EPHA1P21709 976 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 MSX1P28360 303 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 PKLRP30613 574 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 TSFMP43897 325 aaKnown RBP12.96□□□□□ -0.34
CPSF1-212ENST00000616140 ETV1P50549 477 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 SLC9A3R2Q15599 337 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 MEP1BQ16820 701 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 RIMKLAQ8IXN7 391 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 PLPP6Q8IY26 295 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 LILRB2Q8N423 598 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 TXNDC15Q96J42 360 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 ELF4Q99607 663 aaPredicted RBP12.96□□□□□ -0.34
CPSF1-212ENST00000616140 HINT3Q9NQE9 182 aaKnown RBP12.96□□□□□ -0.34
CPSF1-212ENST00000616140 SAGE1Q9NXZ1 904 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 CORINQ9Y5Q5 1042 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 NPFFR2Q9Y5X5 522 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 NID1P14543 1247 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 OPCMLQ14982 345 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 PAQR8Q8TEZ7 354 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 ARSGQ96EG1 525 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 TEAD3Q99594 435 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 SIAEQ9HAT2 523 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 PLCXD1Q9NUJ7 323 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 EHFQ9NZC4 300 aa12.96□□□□□ -0.34
CPSF1-212ENST00000616140 TRABD2BA6NFA1 517 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 SUSD5O60279 629 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 SBK2P0C263 348 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 CX3CR1P49238 355 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 TNK1Q13470 666 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 EIF2S3LQ2VIR3 472 aaKnown RBP12.95□□□□□ -0.34
CPSF1-212ENST00000616140 ESPNLQ6ZVH7 1005 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 PTOV1Q86YD1 416 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 RASD2Q96D21 266 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 SORCS2Q96PQ0 1159 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 FYTTD1Q96QD9 318 aaKnown RBP12.95□□□□□ -0.34
CPSF1-212ENST00000616140 OR5B12Q96R08 314 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 NRSN2Q9GZP1 204 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 KIR3DX1Q9H7L2 352 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 PLAC1Q9HBJ0 212 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 SPHK1Q9NYA1 384 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 KLHL13Q9P2N7 655 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 UBBP0CG47 229 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 UBCP0CG48 685 aaKnown RBP12.95□□□□□ -0.34
CPSF1-212ENST00000616140 FOSL2P15408 326 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 HTR2CP28335 458 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 CXCL12P48061 93 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 PSPHP78330 225 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 TECPR1Q7Z6L1 1165 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 PPP1R3BQ86XI6 285 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 OR5D18Q8NGL1 313 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 DYNC2LI1Q8TCX1 351 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 BCL7CQ8WUZ0 217 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-212ENST00000616140 LINC01599Q8WXQ3 324 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 VN1R3Q9BXE9 311 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 SELENOIQ9C0D9 397 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 FGF21Q9NSA1 209 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 DAPP1Q9UN19 280 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 SMLR1H3BR10 107 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 B4GALT3O60512 393 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 FBXO24O75426 580 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 ZNF254O75437 659 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 WDPCPO95876 746 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 PEX11BO96011 259 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 ATP1B1P05026 303 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 APEHP13798 732 aaKnown RBP12.95□□□□□ -0.34
CPSF1-212ENST00000616140 SLC19A1P41440 591 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 LUMP51884 338 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-212ENST00000616140 GALEQ14376 348 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 ADIPOR2Q86V24 386 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 ZNF679Q8IYX0 411 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 OR1J4Q8NGS1 313 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 SLC37A2Q8TED4 501 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 LCORQ96JN0 433 aaPredicted RBP12.95□□□□□ -0.34
CPSF1-212ENST00000616140 CDCA4Q9BXL8 241 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 C1orf198Q9H425 327 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 CDH20Q9HBT6 801 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 TBC1D29Q9UFV1 150 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 CAMK2AQ9UQM7 478 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 SHROOM3Q8TF72 1996 aa12.95□□□□□ -0.34
CPSF1-212ENST00000616140 LINC01553A4QN01 128 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 ZAR1LA6NP61 321 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 RFXAPO00287 272 aa12.94□□□□□ -0.34
CPSF1-212ENST00000616140 FZD6O60353 706 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms