RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	FOXC1	Q12948	553 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	OR1Q1	Q15612	314 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	KCNJ8	Q15842	424 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	NTRK2	Q16620	822 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	NDUFA5	Q16718	116 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	DCAF10	Q5QP82	559 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	H3F3C	Q6NXT2	135 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	ZNF322	Q6U7Q0	402 aa	Predicted RBP	10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	CXXC5	Q7LFL8	322 aa	Known RBP	10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	MARCH3	Q86UD3	253 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	MISP	Q8IVT2	679 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	OR5M3	Q8NGP4	307 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	TMEM255B	Q8WV15	326 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	TMEM239	Q8WW34	195 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	HGD	Q93099	445 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	KCTD12	Q96CX2	325 aa	Known RBP	10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	ZC3HAV1L	Q96H79	300 aa	Known RBP	10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	DIRAS2	Q96HU8	199 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	OR52D1	Q9H346	318 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	ABCB9	Q9NP78	766 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	ATP13A2	Q9NQ11	1180 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	CMC2	Q9NRP2	79 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	C14orf119	Q9NWQ9	140 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	HAO2	Q9NYQ3	351 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	PCDHGB7	Q9Y5F8	929 aa		10.63	□□□□□ -0.71
VRK3-223	ENST00000601341	HTR3E	A5X5Y0	456 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	MASP2	O00187	686 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	CDC42EP2	O14613	210 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	TP53I11	O14683	189 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	EIF4E2	O60573	245 aa	Known RBP	10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	LYPD3	O95274	346 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	HTR2A	P28223	471 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	ACAA2	P42765	397 aa	Known RBP	10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	RFX2	P48378	723 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	SSR4	P51571	173 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	POU4F2	Q12837	409 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	AIMP2	Q13155	320 aa	Known RBP	10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	SKP2	Q13309	424 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	ZNF791	Q3KP31	576 aa	Predicted RBP	10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	CLEC12A	Q5QGZ9	265 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	FCRLB	Q6BAA4	426 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	NIPAL3	Q6P499	406 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	FAM131A	Q6UXB0	335 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	MEPCE	Q7L2J0	689 aa	Known RBP	10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	NRARP	Q7Z6K4	114 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	TMEM156	Q8N614	296 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	LSMEM1	Q8N8F7	131 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	CLEC1A	Q8NC01	280 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	GRHL3	Q8TE85	626 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	SNX18	Q96RF0	628 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	UBL7	Q96S82	380 aa	Predicted RBP	10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	SECISBP2	Q96T21	854 aa	Known RBP	10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	ZNF426	Q9BUY5	554 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	LAT2	Q9GZY6	243 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	TPK1	Q9H3S4	243 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	HINT3	Q9NQE9	182 aa	Known RBP	10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	SACM1L	Q9NTJ5	587 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	KLK13	Q9UKR3	277 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	NTNG1	Q9Y2I2	539 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341		A0A1W2PQ09	198 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	CASK	O14936	926 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	HCRTR2	O43614	444 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	CHP2	O43745	196 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	SCO2	O43819	266 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	SLC19A2	O60779	497 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	TMCC2	O75069	709 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	ADAM11	O75078	769 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	TRIM3	O75382	744 aa	Predicted RBP	10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	KRT8	P05787	483 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	ATP6V1E1	P36543	226 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	DDOST	P39656	456 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	SLC6A8	P48029	635 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	MTNR1B	P49286	362 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	FOXK2	Q01167	660 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	GALE	Q14376	348 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	BAK1	Q16611	211 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	NDUFAF6	Q330K2	333 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	SLC35F1	Q5T1Q4	408 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	VASH2	Q86V25	355 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	RDH10	Q8IZV5	341 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	OR10G3	Q8NGC4	313 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	OR6F1	Q8NGZ6	308 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	NEIL3	Q8TAT5	605 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	FANK1	Q8TC84	345 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	THAP4	Q8WY91	577 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	TMEM203	Q969S6	136 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	THOC3	Q96J01	351 aa	Known RBP	10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	SAMD8	Q96LT4	415 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	TM9SF2	Q99805	663 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	RTN4R	Q9BZR6	473 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	BABAM2	Q9NXR7	383 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	RPS6KB2	Q9UBS0	482 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	TEKT2	Q9UIF3	430 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	MED31	Q9Y3C7	131 aa		10.62	□□□□□ -0.71
VRK3-223	ENST00000601341	GABRP	O00591	440 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	RGS13	O14921	159 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	CCNK	O75909	580 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	CSF3	P09919	207 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	EVX1	P49640	407 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	CCR4	P51679	360 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 28 ms