RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ZNF446Q9NWS9 450 aa11.42□□□□□ -0.58
LIG1-212ENST00000596549 RPS6KB2Q9UBS0 482 aa11.42□□□□□ -0.58
LIG1-212ENST00000596549 TRIM33Q9UPN9 1127 aa11.42□□□□□ -0.58
LIG1-212ENST00000596549 FN1P02751 2386 aaKnown RBP11.41□□□□□ -0.58
LIG1-212ENST00000596549 A0A087WUJ7 227 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 PRORSD1PA6NEY8 169 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 LRRN3E7EW58 273 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 FXYD1O00168 92 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 TRAF3IP2O43734 574 aaPredicted RBP11.41□□□□□ -0.58
LIG1-212ENST00000596549 CDH2P19022 906 aaPredicted RBP11.41□□□□□ -0.58
LIG1-212ENST00000596549 GTF2E2P29084 291 aaKnown RBP11.41□□□□□ -0.58
LIG1-212ENST00000596549 GRPRP30550 384 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 ACVR1BP36896 505 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 GZMMP51124 257 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 CLDN17P56750 224 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 TNK1Q13470 666 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 OR1Q1Q15612 314 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 NRF1Q16656 503 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 DUSP7Q16829 419 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 CYP51A1Q16850 503 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 CLEC12BQ2HXU8 276 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 TBRG1Q3YBR2 411 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 ULK3Q6PHR2 472 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 SLC22A25Q6T423 547 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 KLHL17Q6TDP4 642 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 WDFY1Q8IWB7 410 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 C11orf65Q8NCR3 313 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 TSPEARQ8WU66 669 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 DNAJA4Q8WW22 397 aaPredicted RBP11.41□□□□□ -0.58
LIG1-212ENST00000596549 GTPBP3Q969Y2 492 aaKnown RBP11.41□□□□□ -0.58
LIG1-212ENST00000596549 SLC41A3Q96GZ6 507 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 ZNF607Q96SK3 696 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 GRIP2Q9C0E4 1043 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 MGAT4BQ9UQ53 548 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 RCE1Q9Y256 329 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 ZANQ9Y493 2812 aa11.41□□□□□ -0.58
LIG1-212ENST00000596549 CHD3Q12873 2000 aaKnown RBP11.41□□□□□ -0.58
LIG1-212ENST00000596549 TRAV36DV7A0A075B6V5 113 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 IGHV1-18A0A0C4DH31 117 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 ZNF587BE7ETH6 402 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 ATP6V1G2-DDX39BF2Z307 99 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 AIM2O14862 343 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 HPRP00739 348 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 BGLAPP02818 100 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 THY1P04216 161 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 CD247P20963 164 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 TTKP33981 857 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 PCGF2P35227 344 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 CDH12P55289 794 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 TUBA1BP68363 451 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 TUBA4AP68366 448 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 TGFBR3Q03167 851 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 RBBP4Q09028 425 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 VEZF1Q14119 521 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 TRMT5Q32P41 509 aaKnown RBP11.4□□□□□ -0.58
LIG1-212ENST00000596549 C5orf46Q6UWT4 87 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 WDR88Q6ZMY6 472 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 TUBA1AQ71U36 451 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 ABHD12BQ7Z5M8 362 aaPredicted RBP11.4□□□□□ -0.58
LIG1-212ENST00000596549 TMEM123Q8N131 208 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 ADPRHL1Q8NDY3 354 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 OR6T1Q8NGN1 323 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 TAMM41Q96BW9 452 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 SLC47A1Q96FL8 570 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 TRMT61AQ96FX7 289 aaKnown RBP11.4□□□□□ -0.58
LIG1-212ENST00000596549 RADILQ96JH8 1075 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 MOGAT1Q96PD6 335 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 DHRS9Q9BPW9 319 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 CACNG6Q9BXT2 260 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 LINC00470Q9BZP3 86 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 ALG2Q9H553 416 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 SEC61A2Q9H9S3 476 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 FGFR1OP2Q9NVK5 253 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 POU2F3Q9UKI9 436 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 B3GALT5Q9Y2C3 310 aa11.4□□□□□ -0.58
LIG1-212ENST00000596549 ARFGEF3Q5TH69 2177 aa11.4□□□□□ -0.59
LIG1-212ENST00000596549 YLPM1P49750 1951 aaKnown RBP11.39□□□□□ -0.59
LIG1-212ENST00000596549 ARPC4-TTLL3A0A0A6YYG9 625 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 ZNF503-AS2A6NEH8 195 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 FAM171A2A8MVW0 826 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 OR2T1O43869 369 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 SERPINB7O75635 380 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 LYPD3O95274 346 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 HLA-DOBP13765 273 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 ZNF43P17038 809 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 PRPS1P60891 318 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 ROR2Q01974 943 aaKnown RBP11.39□□□□□ -0.59
LIG1-212ENST00000596549 SF3A3Q12874 501 aaKnown RBP eCLIP11.39□□□□□ -0.591e-7■■■■□ 19.8
LIG1-212ENST00000596549 ETFDHQ16134 617 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 RABL3Q5HYI8 236 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 PHYHD1Q5SRE7 291 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 AGAP6Q5VW22 663 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 METTL21CQ5VZV1 264 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 KLHL24Q6TFL4 600 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 MYPOPQ86VE0 399 aaPredicted RBP11.39□□□□□ -0.59
LIG1-212ENST00000596549 RANBP3LQ86VV4 465 aaPredicted RBP11.39□□□□□ -0.59
LIG1-212ENST00000596549 RBM45Q8IUH3 476 aaKnown RBP11.39□□□□□ -0.59
LIG1-212ENST00000596549 MAPK1IP1LQ8NDC0 245 aa11.39□□□□□ -0.59
LIG1-212ENST00000596549 BHLHE22Q8NFJ8 381 aaPredicted RBP11.39□□□□□ -0.59
LIG1-212ENST00000596549 OR10A6Q8NH74 314 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms