RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 BBIP1A8MTZ0 92 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 SHISA9B4DS77 424 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 M0R082 166 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 M0R1B8 84 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 M0R3H8 397 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 TPST2O60704 377 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 FZD7O75084 574 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 SOD3P08294 240 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 DANCRP0C864 163 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 CD40P25942 277 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 GRPRP30550 384 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 CDH12P55289 794 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 ATP5J2P56134 94 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 IL1RL1Q01638 556 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 VMACQ2NL98 169 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 CGB2Q6NT52 195 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 ZNF613Q6PF04 617 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 SLC22A25Q6T423 547 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 BIVMQ86UB2 503 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 DEPDC4Q8N2C3 294 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 OR8J3Q8NGG0 315 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 OR6S1Q8NH40 331 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 ZNF417Q8TAU3 575 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 RASSF5Q8WWW0 418 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 GTPBP3Q969Y2 492 aaKnown RBP13.4□□□□□ -0.26
TRIM28-203ENST00000593582 OXGR1Q96P68 337 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 ZNF587Q96SQ5 575 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-203ENST00000593582 MCHR1Q99705 422 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 ARHGDIGQ99819 225 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 ECSITQ9BQ95 431 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 SLC17A5Q9NRA2 495 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 KLHL14Q9P2G3 628 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 SEC14L4Q9UDX3 406 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 POU2F3Q9UKI9 436 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 RCE1Q9Y256 329 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 CORINQ9Y5Q5 1042 aa13.4□□□□□ -0.26
TRIM28-203ENST00000593582 ARID1AO14497 2285 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 MRASO14807 208 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 WNT11O96014 354 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 INHBBP09529 407 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 NQO1P15559 274 aaKnown RBP13.39□□□□□ -0.27
TRIM28-203ENST00000593582 CBLP22681 906 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 CLDN17P56750 224 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 PRPS1P60891 318 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 NRF1Q16656 503 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 RABL3Q5HYI8 236 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 REP15Q6BDI9 236 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 SNX32Q86XE0 403 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 WDR31Q8NA23 367 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 PCYOX1LQ8NBM8 494 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 ADPRHL1Q8NDY3 354 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 GPR32P1Q8NGA4 272 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 OR6T1Q8NGN1 323 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 TAMM41Q96BW9 452 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 TRMT61AQ96FX7 289 aaKnown RBP13.39□□□□□ -0.27
TRIM28-203ENST00000593582 ALKBH3Q96Q83 286 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-203ENST00000593582 TMEM43Q9BTV4 400 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 BDH2Q9BUT1 245 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 C1QTNF6Q9BXI9 259 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 ASPNQ9BXN1 380 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 ALG2Q9H553 416 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 GID8Q9NWU2 228 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 B3GAT1Q9P2W7 334 aa13.39□□□□□ -0.27
TRIM28-203ENST00000593582 C2CD3Q4AC94 2353 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 NIPBLQ6KC79 2804 aaeCLIP13.38□□□□□ -0.273e-6■■□□□ 13.6
TRIM28-203ENST00000593582 LOC100653049A0A140TA62 436 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 LOC102725191A0A1B0GVB3 256 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 OVOL3O00110 214 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 FXYD1O00168 92 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 CHP2O43745 196 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 AKAP8O43823 692 aaKnown RBP13.38□□□□□ -0.27
TRIM28-203ENST00000593582 SLC43A1O75387 559 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 KRT34O76011 436 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 GZMMP51124 257 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 LGALS3BPQ08380 585 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 PGGHGQ32M88 737 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 HIKESHIQ53FT3 197 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 HMBOX1Q6NT76 420 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 C10orf53Q8N6V4 93 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 SCAIQ8N9R8 606 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 VANGL1Q8TAA9 524 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-203ENST00000593582 BOD1Q96IK1 185 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 LINC00470Q9BZP3 86 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 GSX1Q9H4S2 264 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-203ENST00000593582 OBP2BQ9NPH6 170 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 CAPN7Q9Y6W3 813 aa13.38□□□□□ -0.27
TRIM28-203ENST00000593582 CPSF4LA6NMK7 179 aaKnown RBP13.37□□□□□ -0.27
TRIM28-203ENST00000593582 FAM171A2A8MVW0 826 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 H7C1Q1 480 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 SLC22A2O15244 555 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 UPK3AO75631 287 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 ZNF432O94892 652 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 MT-ATP6P00846 226 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 CD247P20963 164 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 PTNP21246 168 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 MDH1P40925 334 aaKnown RBP13.37□□□□□ -0.27
TRIM28-203ENST00000593582 SH3BGRP55822 239 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-203ENST00000593582 UBE2NP61088 152 aaKnown RBP13.37□□□□□ -0.27
TRIM28-203ENST00000593582 SLC25A3Q00325 362 aa13.37□□□□□ -0.27
TRIM28-203ENST00000593582 ROR2Q01974 943 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms