RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 HOXA9P31269 272 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 GPR176Q14439 515 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 SLC22A6Q4U2R8 563 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 TRMT12Q53H54 448 aaKnown RBP14.19□□□□□ -0.14
CIITA-204ENST00000570546 TMEM31Q5JXX7 168 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 ZNF620Q6ZNG0 422 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 VASH1Q7L8A9 365 aaPredicted RBP14.19□□□□□ -0.14
CIITA-204ENST00000570546 DPY19L4Q7Z388 723 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 SLC41A2Q96JW4 573 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 SLC6A17Q9H1V8 727 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 TRBV11-1A0A0K0K1C0 115 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 ATP1B1P05026 303 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 CHRM4P08173 479 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 CSNK1A1P48729 337 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 BEX5Q5H9J7 111 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 IDO2Q6ZQW0 420 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 COX15Q7KZN9 410 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 FAM160A2Q8N612 972 aaPredicted RBP14.19□□□□□ -0.14
CIITA-204ENST00000570546 FNDC9Q8TBE3 224 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 SLC2A12Q8TD20 617 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 PAQR8Q8TEZ7 354 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 PCNPQ8WW12 178 aaKnown RBP14.19□□□□□ -0.14
CIITA-204ENST00000570546 PHYHIPQ92561 330 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 ZNF578Q96N58 590 aaPredicted RBP14.19□□□□□ -0.14
CIITA-204ENST00000570546 RBM38Q9H0Z9 239 aaKnown RBP14.19□□□□□ -0.14
CIITA-204ENST00000570546 OR52A5Q9H2C5 316 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 LYRM4Q9HD34 91 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 SHROOM3Q8TF72 1996 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 DVL2O14641 736 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 NUPL2O15504 423 aaKnown RBP14.19□□□□□ -0.14
CIITA-204ENST00000570546 HTRA3P83110 453 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 ZNF511Q8NB15 262 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 OR14A16Q8NHC5 309 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 NCDNQ9UBB6 729 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 NPFFR2Q9Y5X5 522 aa14.19□□□□□ -0.14
CIITA-204ENST00000570546 A6NL46 340 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 LCMT2O60294 686 aaKnown RBP14.18□□□□□ -0.14
CIITA-204ENST00000570546 IGHG1P01857 330 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 PXNP49023 591 aaPredicted RBP14.18□□□□□ -0.14
CIITA-204ENST00000570546 GPLD1P80108 840 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 ZNF585AQ6P3V2 769 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 SENP5Q96HI0 755 aaPredicted RBP14.18□□□□□ -0.14
CIITA-204ENST00000570546 FYTTD1Q96QD9 318 aaKnown RBP14.18□□□□□ -0.14
CIITA-204ENST00000570546 ZNF649Q9BS31 505 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 LRIT1Q9P2V4 623 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 STEAP1Q9UHE8 339 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 ARFGEF1Q9Y6D6 1849 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 OTX2P32243 289 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 RIN1Q13671 783 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 CMIPQ8IY22 773 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 ZNF683Q8IZ20 524 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 STK35Q8TDR2 534 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 RLN3Q8WXF3 142 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 TMEM43Q9BTV4 400 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 SEMA6CQ9H3T2 930 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 SLC25A19Q9HC21 320 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 HINT3Q9NQE9 182 aaKnown RBP14.18□□□□□ -0.14
CIITA-204ENST00000570546 TRAV36DV7A0A075B6V5 113 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 EFCAB7A8K855 629 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 IFNA1P01562 189 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 ZNF35P13682 527 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 EIF2S3P41091 472 aaKnown RBP14.18□□□□□ -0.14
CIITA-204ENST00000570546 PRSS36Q5K4E3 855 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 CD276Q5ZPR3 534 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 IL17RCQ8NAC3 791 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 ZNF285Q96NJ3 590 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 NUDT22Q9BRQ3 303 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 OR10A2Q9H208 303 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 ISYNA1Q9NPH2 558 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 REV1Q9UBZ9 1251 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 SCN9AQ15858 1988 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 PIGBOS1A0A0B4J2F0 54 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 A0A0D9SG52 128 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 FAM230AA0A1W2PPH8 454 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 PRRT4C9JH25 899 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 GLCEO94923 617 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 RFPL4BQ6ZWI9 263 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 PRSS45Q7RTY3 260 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 MSRB3Q8IXL7 192 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 SDF2Q99470 211 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 PLEK2Q9NYT0 353 aa14.18□□□□□ -0.14
CIITA-204ENST00000570546 AGPAT2O15120 278 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 YY2O15391 372 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 CTSLP07711 333 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 SBK2P0C263 348 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 HTR4Q13639 388 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 SMAD2Q15796 467 aaKnown RBP14.17□□□□□ -0.14
CIITA-204ENST00000570546 GPR155Q7Z3F1 870 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 VN1R2Q8NFZ6 395 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 CROCCQ5TZA2 2017 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 HCRTR1O43613 425 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 THBS1P07996 1170 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 IFNGR1P15260 489 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 CD38P28907 300 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 SRYQ05066 204 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 PYCR3Q53H96 274 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 NELFAQ9H3P2 528 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 DUSP22Q9NRW4 184 aa14.17□□□□□ -0.14
CIITA-204ENST00000570546 C19orf53Q9UNZ5 99 aaPredicted RBP14.17□□□□□ -0.14
CIITA-204ENST00000570546 ANKRD33BA6NCL7 494 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms