RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 RBM39Q14498 530 aaKnown RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 ZNF268Q14587 947 aaPredicted RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 ATXN7L3Q14CW9 347 aaPredicted RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PDGFRLQ15198 375 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CYTH1Q15438 398 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 VAMP3Q15836 100 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 SNCBQ16143 134 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 VPS26BQ4G0F5 336 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 DMRTC1Q5HYR2 192 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 SOHLH1Q5JUK2 328 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 BEND6Q5SZJ8 279 aaPredicted RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 STEAP1BQ6NZ63 245 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 ENPP6Q6UWR7 440 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 LRRC31Q6UY01 552 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 ASRGL1Q7L266 308 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 FAM122BQ7Z309 247 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 POLNQ7Z5Q5 900 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 RANBP3LQ86VV4 465 aaPredicted RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 SLC26A11Q86WA9 606 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 LINC00518Q8N0U6 118 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 MAGEE2Q8TD90 523 aaPredicted RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 WFIKKN2Q8TEU8 576 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 ACOT11Q8WXI4 607 aaPredicted RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PIK3R3Q92569 461 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 NR4A3Q92570 626 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 C3orf30Q96M34 536 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 XPO6Q96QU8 1125 aaKnown RBP4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CSF3RQ99062 836 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 TSGA10Q9BZW7 698 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 OR2B2Q9GZK3 357 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 OR2S2Q9NQN1 319 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 PARVAQ9NVD7 372 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 FKBP14Q9NWM8 211 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 MARCH5Q9NX47 278 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 CLEC2DQ9UHP7 191 aa4.56□□□□□ -1.68
VPS35P1-201ENST00000563400 A0A0G2JK05 382 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 hDV102S1A0JD36 115 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 C2CD4DB7Z1M9 353 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 G3V4G9 280 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 M0QYV0 167 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 PSIP1O75475 530 aaKnown RBP4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 AHSA1O95433 338 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 ETHE1O95571 254 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 F10P00742 488 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 RPN2P04844 631 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 H2AFZP0C0S5 128 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 HOXB2P14652 356 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 PSMC3P17980 439 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 LMO1P25800 156 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 GABRR2P28476 465 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 CEACAM3P40198 252 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 RPL13AP40429 203 aaKnown RBP4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 GDI2P50395 445 aaKnown RBP4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 PRPS1P60891 318 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 CDR2Q01850 454 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 NHLH1Q02575 133 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 KLRB1Q12918 225 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 RALGAPA2Q2PPJ7 1873 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 PIK3CD-AS1Q5SR53 167 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 H2AFVQ71UI9 128 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 SLC16A14Q7RTX9 510 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 LIMS2Q7Z4I7 341 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 ANKRD37Q7Z713 158 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 MRGPREQ86SM8 312 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 ZNF546Q86UE3 836 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 STX12Q86Y82 276 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 FAM71AQ8IYT1 594 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 ATP6V0D2Q8N8Y2 350 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 SMRP1Q8NCR6 262 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 B3GNT7Q8NFL0 401 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 OR4F6Q8NGB9 312 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 RDH11Q8TC12 318 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 SMARCD2Q92925 531 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 PIGTQ969N2 578 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 ELSPBP1Q96BH3 223 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 PPP1R14BQ96C90 147 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 SLC6A7Q99884 636 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 MAP1LC3CQ9BXW4 147 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 MFSD1Q9H3U5 465 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 SAV1Q9H4B6 383 aaPredicted RBP4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 NMRAL1Q9HBL8 299 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 POPDC2Q9HBU9 364 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 IMP3Q9NV31 184 aaKnown RBP4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 PARPBPQ9NWS1 579 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 PPP4R1LQ9P1A2 415 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 PILRBQ9UKJ0 227 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 SCML2Q9UQR0 700 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 MYRFQ9Y2G1 1151 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 TSSC4Q9Y5U2 329 aaPredicted RBP4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 PEX16Q9Y5Y5 336 aa4.55□□□□□ -1.68
VPS35P1-201ENST00000563400 TDRD15B5MCY1 1934 aaKnown RBP4.54□□□□□ -1.68
VPS35P1-201ENST00000563400 CENPVL1A0A0U1RR11 272 aa4.54□□□□□ -1.68
VPS35P1-201ENST00000563400 HIDE1A8MVS5 230 aa4.54□□□□□ -1.68
VPS35P1-201ENST00000563400 NPIPA7E9PJI5 369 aa4.54□□□□□ -1.68
VPS35P1-201ENST00000563400 F8VP50 259 aa4.54□□□□□ -1.68
VPS35P1-201ENST00000563400 KLRC4-KLRK1H3BQV0 150 aa4.54□□□□□ -1.68
VPS35P1-201ENST00000563400 ITM2AO43736 263 aa4.54□□□□□ -1.68
VPS35P1-201ENST00000563400 CHST1O43916 411 aa4.54□□□□□ -1.68
VPS35P1-201ENST00000563400 ADAP1O75689 374 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms