RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 AENQ8WTP8 325 aaKnown RBP14.21□□□□□ -0.13
CLN3-208ENST00000561505 ZNF75AQ96N20 296 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 ANKRD27Q96NW4 1050 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 SPATA9Q9BWV2 254 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 NUF2Q9BZD4 464 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 SLC6A13Q9NSD5 602 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 B3GNT2Q9NY97 397 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 CALML5Q9NZT1 146 aa14.21□□□□□ -0.13
CLN3-208ENST00000561505 TMEFF2Q9UIK5 374 aaPredicted RBP14.21□□□□□ -0.13
CLN3-208ENST00000561505 A0A0A6YYJ9 748 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 ZNF503-AS2A6NEH8 195 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 SLCO1B7G3V0H7 640 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 SDHDO14521 159 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 TCF21O43680 179 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 KRT33AO76009 404 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 KRT75O95678 551 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 PNMTP11086 282 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 ARR3P36575 388 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 DVL1P1P54792 670 aaPredicted RBP14.2□□□□□ -0.14
CLN3-208ENST00000561505 ARF1P84077 181 aaKnown RBP14.2□□□□□ -0.14
CLN3-208ENST00000561505 ROR2Q01974 943 aaKnown RBP14.2□□□□□ -0.14
CLN3-208ENST00000561505 TNFAIP8L3Q5GJ75 292 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 PRAMEF8Q5VWM4 474 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 PRAMEF7Q5VXH5 474 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 NIPAL3Q6P499 406 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 NHLRC1Q6VVB1 395 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 GLB1L3Q8NCI6 653 aaPredicted RBP14.2□□□□□ -0.14
CLN3-208ENST00000561505 SLC38A5Q8WUX1 472 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 ZFAND2BQ8WV99 257 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 OR52E6Q96RD3 313 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 C12orf10Q9HB07 376 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 ADPRHL2Q9NX46 363 aa14.2□□□□□ -0.14
CLN3-208ENST00000561505 ZNF443Q9Y2A4 671 aaPredicted RBP14.2□□□□□ -0.14
CLN3-208ENST00000561505 A0A096LPE4 126 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 A0A1W2PPZ6 126 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 VSTM5A8MXK1 200 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 hCG_2039718K7EN88 272 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 TM9SF1O15321 606 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 CELA3BP08861 270 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 CRISP3P54108 245 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 COPZ1P61923 177 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 VSNL1P62760 191 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 TUBA1BP68363 451 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 TUBA4AP68366 448 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 IFFO1Q0D2I5 559 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 MPP2Q14168 576 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 TUBA1AQ71U36 451 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 TMEM123Q8N131 208 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 UBASH3BQ8TF42 649 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 ZNF837Q96EG3 531 aaPredicted RBP14.19□□□□□ -0.14
CLN3-208ENST00000561505 OXGR1Q96P68 337 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 RSPO3Q9BXY4 272 aaPredicted RBP14.19□□□□□ -0.14
CLN3-208ENST00000561505 RACGAP1Q9H0H5 632 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 GPR35Q9HC97 309 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 P2RX2Q9UBL9 471 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 PCDHB14Q9Y5E9 798 aa14.19□□□□□ -0.14
CLN3-208ENST00000561505 A0A0G2JPF8 293 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 WDR91A4D1P6 747 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 HNRNPCL2B2RXH8 293 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 HNRNPCL3B7ZW38 293 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 HAX1O00165 279 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 HNRNPCL1O60812 293 aaKnown RBP14.18□□□□□ -0.14
CLN3-208ENST00000561505 GSNP06396 782 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 HNRNPCL4P0DMR1 293 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 CARTPTQ16568 116 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 ZCCHC24Q8N2G6 241 aaKnown RBP14.18□□□□□ -0.14
CLN3-208ENST00000561505 CADM2Q8N3J6 435 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 LSMEM1Q8N8F7 131 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 BCL2L10Q9HD36 194 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 PNPOQ9NVS9 261 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 THUMPD1Q9NXG2 353 aaKnown RBP14.18□□□□□ -0.14
CLN3-208ENST00000561505 IFT52Q9Y366 437 aa14.18□□□□□ -0.14
CLN3-208ENST00000561505 TRAF3IP2O43734 574 aaPredicted RBP14.17□□□□□ -0.14
CLN3-208ENST00000561505 AHSA1O95433 338 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 IL6P05231 212 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 BMP2P12643 396 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 ETFAP13804 333 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 ZNF43P17038 809 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 ITGA2P17301 1181 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 NR4A1P22736 598 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 APEX1P27695 318 aaKnown RBP14.17□□□□□ -0.14
CLN3-208ENST00000561505 CLDN17P56750 224 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 LARS2Q15031 903 aaKnown RBP14.17□□□□□ -0.14
CLN3-208ENST00000561505 MSMPQ1L6U9 139 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 VHLLQ6RSH7 139 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 C5orf46Q6UWT4 87 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 MSANTD1Q6ZTZ1 278 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 SPATA21Q7Z572 469 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 NET1Q7Z628 596 aaPredicted RBP14.17□□□□□ -0.14
CLN3-208ENST00000561505 SERPINA11Q86U17 422 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 KDM8Q8N371 416 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 SVOPLQ8N434 492 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 MREGQ8N565 214 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 ADPRHL1Q8NDY3 354 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 OR6S1Q8NH40 331 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 PNPT1Q8TCS8 783 aaKnown RBP14.17□□□□□ -0.14
CLN3-208ENST00000561505 KTI12Q96EK9 354 aaPredicted RBP14.17□□□□□ -0.14
CLN3-208ENST00000561505 SLC41A3Q96GZ6 507 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 LRR1Q96L50 414 aa14.17□□□□□ -0.14
CLN3-208ENST00000561505 TPT1P8Q9HAU6 139 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms