RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 SLC39A3Q9BRY0 314 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ANP32EQ9BTT0 268 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 FAIM2Q9BWQ8 316 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 SUDS3Q9H7L9 328 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 FOLH1BQ9HBA9 442 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 LY9Q9HBG7 655 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 TNFRSF19Q9NS68 423 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 SLC2A8Q9NY64 477 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 VNN3Q9NY84 501 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 PTTG3PQ9NZH4 202 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 CD274Q9NZQ7 290 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 TMEM9Q9P0T7 183 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 PSMC3IPQ9P2W1 217 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 LSM7Q9UK45 103 aaKnown RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 IKZF2Q9UKS7 526 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ZNF256Q9Y2P7 627 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 STARD10Q9Y365 291 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 RPL36Q9Y3U8 105 aaKnown RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 V9GY05 133 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 THSD7BQ9C0I4 1608 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 FAM231BA6NCW3 169 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 EPOPA6NHQ4 379 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 C12orf77C9JDV5 145 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 LOC110117498-PIK3R3F6TDL0 507 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 GOLGA8SH3BPF8 625 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 TNFSF11O14788 317 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 PPP1R2P9O14990 202 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 PSTPIP1O43586 416 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 HCRTR1O43613 425 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 TRAF3IP2O43734 574 aaPredicted RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 SRSF10O75494 262 aaKnown RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 TNFSF13O75888 250 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 SERF1AO75920 110 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 NDUFB10O96000 172 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 SERPIND1P05546 499 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 ASGR1P07306 291 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 FGF4P08620 206 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 SFTPCP11686 197 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 ABOP16442 354 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 ZNF43P17038 809 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 TNNI1P19237 187 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 PSMB1P20618 241 aaKnown RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 GALP22466 123 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 ATP5C1P36542 298 aaKnown RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 EPS15P42566 896 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 CRYBB2P43320 205 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 GYG1P46976 350 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 P2RY4P51582 365 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 HNRNPA3P51991 378 aaKnown RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 PLK1P53350 603 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 ACLYP53396 1101 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 APOC4P55056 127 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 SELENOTP62341 195 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 KCNJ2P63252 427 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 IGLV3-21P80748 117 aaPredicted RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 NDPQ00604 133 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 ZNF45Q02386 682 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 PDIA2Q13087 525 aaKnown RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 ILKQ13418 452 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 IDI1Q13907 227 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 KIAA0040Q15053 153 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 TGFBIQ15582 683 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 KYAT1Q16773 422 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 DGUOKQ16854 277 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 PARP15Q460N3 678 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 PRR30Q53SZ7 412 aaPredicted RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 SOHLH1Q5JUK2 328 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 PAGE3Q5JUK9 113 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 C1orf100Q5SVJ3 147 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 C1orf146Q5VVC0 180 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 CARD17Q5XLA6 110 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 CTRB2Q6GPI1 263 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 SPINK14Q6IE38 97 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 TRIM40Q6P9F5 258 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 WDR74Q6RFH5 385 aaPredicted RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 METAP1DQ6UB28 335 aaPredicted RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 TFAP2EQ6VUC0 442 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 ZNF836Q6ZNA1 936 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 ZNF620Q6ZNG0 422 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 DNM1P46Q6ZS02 220 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 SLC25A48Q6ZT89 311 aaKnown RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 UTS2BQ765I0 119 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 TMEM179BQ7Z7N9 219 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 P2RY8Q86VZ1 359 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 THOC6Q86W42 341 aaKnown RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 PPP1R27Q86WC6 154 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 RALGPS2Q86X27 583 aaPredicted RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 MARCH9Q86YJ5 346 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 MFSD6LQ8IWD5 586 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 PUSL1Q8N0Z8 303 aaKnown RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 GPD1LQ8N335 351 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 GTPBP8Q8N3Z3 284 aaPredicted RBP1.17□□□□□ -2.22
USP3-209ENST00000558925 MS4A15Q8N5U1 240 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 BBS1Q8NFJ9 593 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 B3GNT7Q8NFL0 401 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 OR52K2Q8NGK3 314 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 OR1S2Q8NGQ3 325 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 SLC22A8Q8TCC7 542 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 C7orf33Q8WU49 177 aa1.17□□□□□ -2.22
USP3-209ENST00000558925 FAM151AQ8WW52 585 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms