RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 SELENONQ9NZV5 590 aa12.77□□□□□ -0.37
SHMT2-235ENST00000557740 CR1P17927 2039 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 A0A096LNT2 108 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 A0A096LPE4 126 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 ARPC4-TTLL3A0A0A6YYG9 625 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 IGHV1-18A0A0C4DH31 117 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 A0A1B0GWA3 101 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 A0A1W2PPZ6 126 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 AKAP8O43823 692 aaKnown RBP12.76□□□□□ -0.37
SHMT2-235ENST00000557740 OR2T1O43869 369 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 SLC43A1O75387 559 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 UPK3AO75631 287 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 ARAFP10398 606 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 IDH3AP50213 366 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 TUBA1BP68363 451 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 TUBA4AP68366 448 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 EGR4Q05215 589 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 LOXL1Q08397 574 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-235ENST00000557740 CHRFAM7AQ494W8 412 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 LRIF1Q5T3J3 769 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 C6orf52Q5T4I8 152 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 FAM69AQ5T7M9 428 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 AGBL2Q5U5Z8 902 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 REEP3Q6NUK4 255 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 DHRS4L2Q6PKH6 230 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 BLOC1S3Q6QNY0 202 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 TUBA1AQ71U36 451 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 CXXC5Q7LFL8 322 aaKnown RBP12.76□□□□□ -0.37
SHMT2-235ENST00000557740 SLC46A3Q7Z3Q1 461 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 KDM8Q8N371 416 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 RNF217Q8TC41 542 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 C10orf105Q8TEF2 133 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 DNAJA4Q8WW22 397 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-235ENST00000557740 BCL2L2Q92843 193 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-235ENST00000557740 SPDL1Q96EA4 605 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 C12orf10Q9HB07 376 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 CCDC167Q9P0B6 97 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.76□□□□□ -0.37
SHMT2-235ENST00000557740 SLC13A4Q9UKG4 626 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 CORO2BQ9UQ03 480 aa12.76□□□□□ -0.37
SHMT2-235ENST00000557740 CHD3Q12873 2000 aaKnown RBP12.76□□□□□ -0.37
SHMT2-235ENST00000557740 TRAV36DV7A0A075B6V5 113 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 PRORSD1PA6NEY8 169 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 M0R082 166 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 HTR2AP28223 471 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 RGS8P57771 180 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-235ENST00000557740 VLDLRP98155 873 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 CDK6Q00534 326 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 ALG10BQ5I7T1 473 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 LINGO2Q7L985 606 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 HIPK1Q86Z02 1210 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 MSRB3Q8IXL7 192 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 GPR137CQ8N3F9 429 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 LSMEM1Q8N8F7 131 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 ANKK1Q8NFD2 765 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 ZNF417Q8TAU3 575 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 MAGEE2Q8TD90 523 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-235ENST00000557740 DYDC1Q8WWB3 177 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 TAAR8Q969N4 342 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 OXGR1Q96P68 337 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 ZNF607Q96SK3 696 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 ZNF587Q96SQ5 575 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-235ENST00000557740 EBF4Q9BQW3 602 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 CCDC28BQ9BUN5 200 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 SLCO1B3Q9NPD5 702 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 CA10Q9NS85 328 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 STAB1Q9NY15 2570 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 SEC14L4Q9UDX3 406 aa12.75□□□□□ -0.37
SHMT2-235ENST00000557740 TESQ9UGI8 421 aaKnown RBP12.75□□□□□ -0.37
SHMT2-235ENST00000557740 EVPLLA8MZ36 301 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 FZD7O75084 574 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 LY6HO94772 140 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 CECR9P0C854 216 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 HOXB1P14653 301 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-235ENST00000557740 USF1P22415 310 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-235ENST00000557740 SLC6A2P23975 617 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 GRPRP30550 384 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 SERPINF1P36955 418 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 PDLIM4P50479 330 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 AQP5P55064 265 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 ARF1P84077 181 aaKnown RBP12.74□□□□□ -0.37
SHMT2-235ENST00000557740 NAAAQ02083 359 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 SCARB2Q14108 478 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 MFSD13AQ14CX5 517 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 CARTPTQ16568 116 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 SWI5Q1ZZU3 235 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 C3orf36Q3SXR2 165 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 PODNL1Q6PEZ8 512 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 ULK3Q6PHR2 472 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 VHLLQ6RSH7 139 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 H1FNTQ75WM6 255 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-235ENST00000557740 FUNDC1Q8IVP5 155 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 PIK3C3Q8NEB9 887 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 NANOS1Q8WY41 292 aaKnown RBP12.74□□□□□ -0.37
SHMT2-235ENST00000557740 PROX1Q92786 737 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 EPYCQ99645 322 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 VAPAQ9P0L0 249 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 SLAMF8Q9P0V8 285 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 KLHL14Q9P2G3 628 aa12.74□□□□□ -0.37
SHMT2-235ENST00000557740 B3GAT1Q9P2W7 334 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms