RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CFPP27918 469 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 IGFALSP35858 605 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 RPL4P36578 427 aaKnown RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 MNX1P50219 401 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 MAP2K6P52564 334 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 SSBP1Q04837 148 aaKnown RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 CBFBQ13951 182 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 ZNF141Q15928 474 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 HSPB2Q16082 182 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 TMEM81Q6P7N7 255 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 ARSKQ6UWY0 536 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 STAC2Q6ZMT1 411 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 GLB1L2Q8IW92 636 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 DND1Q8IYX4 353 aaKnown RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 FLVCR1-AS1Q8TAF5 88 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 PAWRQ96IZ0 340 aaKnown RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 ARPC5LQ9BPX5 153 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 SLC17A9Q9BYT1 436 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 TTTY10Q9BZA0 68 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 C2orf42Q9NWW7 574 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 PILRAQ9UKJ1 303 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 SCML1Q9UN30 329 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 SLC6A5Q9Y345 797 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 TRBV5-5A0A0J9YX44 114 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 ACOD1A6NK06 481 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 H7C417 338 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 CYR61O00622 381 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 MAGEB4O15481 346 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 XRCC3O43542 346 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 RBBP9O75884 186 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 ZFPL1O95159 310 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 KAT7O95251 611 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 CCL5P13501 91 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 APEHP13798 732 aaKnown RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 PSMB10P40306 273 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 TMUB2Q71RG4 321 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 SLC16A9Q7RTY1 509 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 PCNPQ8WW12 178 aaKnown RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 PIGKQ92643 395 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 RERGQ96A58 199 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-231ENST00000557433 RXFP3Q9NSD7 469 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 MTFP1Q9UDX5 166 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 OPN4Q9UHM6 478 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 PCDHGA5Q9Y5G8 931 aa14.9□□□□□ -0.02
SHMT2-231ENST00000557433 COL4A2P08572 1712 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 A0A087WUJ7 227 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 A0A1W2PP55 124 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 SYNDIG1LA6NDD5 238 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 SELENOFO60613 162 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 LDB3O75112 727 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 FGF2P09038 288 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 SLC35E2P0CK97 266 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 ACRP10323 421 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 GABRA1P14867 456 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 ANXA7P20073 488 aaKnown RBP14.89□□□□□ -0.03
SHMT2-231ENST00000557433 KIAA1024LP59773 190 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 GK2Q14410 553 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-231ENST00000557433 ZNF776Q68DI1 518 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-231ENST00000557433 FIGLAQ6QHK4 219 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 TFAP2EQ6VUC0 442 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 SLC36A1Q7Z2H8 476 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 ZNF417Q8TAU3 575 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 LINC00052Q96N35 136 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 PTCHD1Q96NR3 888 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 ZFYVE21Q9BQ24 234 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 SLC25A18Q9H1K4 315 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 TTYH1Q9H313 450 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-231ENST00000557433 CDCP1Q9H5V8 836 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 ZC4H2Q9NQZ6 224 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 PTPRSQ13332 1948 aa14.89□□□□□ -0.03
SHMT2-231ENST00000557433 PRSS38A1L453 326 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 IMPA2O14732 288 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 CTSVO60911 334 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 DCTDP32321 178 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 RPS4XP62701 263 aaKnown RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ID2Q02363 134 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ALKBH1Q13686 389 aaKnown RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 EXOSC7Q15024 291 aaKnown RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 OR5M10Q6IEU7 315 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 KRT77Q7Z794 578 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ZNF227Q86WZ6 799 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ZNF440Q8IYI8 595 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 OR6M1Q8NGM8 313 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 OR6N1Q8NGY5 312 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 OR5AK2Q8NH90 309 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 RGP1Q92546 391 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 NMNAT3Q96T66 252 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 SMAD5Q99717 465 aaKnown RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 LDAHQ9H6V9 325 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 TBC1D29Q9UFV1 150 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 SERGEFQ9UGK8 458 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 RWDD3Q9Y3V2 267 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 HTTP42858 3142 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 SNRNP200O75643 2136 aaKnown RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 A0A1W2PQU0 124 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 F5H5P2 479 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 TSPAN4O14817 238 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 PLRG1O43660 514 aaKnown RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 IL32P24001 234 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 EMDP50402 254 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms