RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TIMM23BQ5SRD1 257 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 C9orf135Q5VTT2 229 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 NIPAL3Q6P499 406 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 ZNF704Q6ZNC4 412 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-219ENST00000555563 H1FNTQ75WM6 255 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-219ENST00000555563 C10orf53Q8N6V4 93 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 POMGNT2Q8NAT1 580 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 ADPRHL1Q8NDY3 354 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 HSD17B8Q92506 261 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 SLC41A3Q96GZ6 507 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 MPP4Q96JB8 637 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 OXGR1Q96P68 337 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 ALKBH3Q96Q83 286 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-219ENST00000555563 ZNF426Q9BUY5 554 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 ASPNQ9BXN1 380 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 AMBRA1Q9C0C7 1298 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 UBTD1Q9HAC8 227 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 HRNRQ86YZ3 2850 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-219ENST00000555563 CIB4A0PJX0 185 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 NDUFAB1O14561 156 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 TRAF3IP2O43734 574 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-219ENST00000555563 DCTN3O75935 186 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 HPRP00739 348 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 PLAUP00749 431 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 ZNF43P17038 809 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 ART1P52961 327 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 CLDN17P56750 224 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 TAS2R41P59536 307 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 IL1RL1Q01638 556 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 C1DQ13901 141 aaKnown RBP12.07□□□□□ -0.48
SHMT2-219ENST00000555563 KEAP1Q14145 624 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 PPA1Q15181 289 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 TTC33Q6PID6 262 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-219ENST00000555563 VTCN1Q7Z7D3 282 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 SCAIQ8N9R8 606 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 LRRC37BQ96QE4 947 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 KCTD14Q9BQ13 255 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-219ENST00000555563 PRSS27Q9BQR3 290 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 SPAG4Q9NPE6 437 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 MRPL39Q9NYK5 338 aaKnown RBP12.07□□□□□ -0.48
SHMT2-219ENST00000555563 NPAP1Q9NZP6 1156 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 EDARQ9UNE0 448 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 RCE1Q9Y256 329 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 SPG11Q96JI7 2443 aa12.07□□□□□ -0.48
SHMT2-219ENST00000555563 AKAP6Q13023 2319 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 PRR14LQ5THK1 2151 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 A0A1W2PR80 420 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 GSTA4O15217 222 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 UPK3AO75631 287 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 OR5F1O95221 314 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 ZNF682O95780 498 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 MT-ATP6P00846 226 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 NCK1P16333 377 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 MPGP29372 298 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 SELENOWP63302 87 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 POU3F1Q03052 451 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-219ENST00000555563 PIN1Q13526 163 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-219ENST00000555563 GABRA6Q16445 453 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 ZNF74Q16587 644 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 P2RY8Q86VZ1 359 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 C1orf162Q8NEQ5 155 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-219ENST00000555563 OR52N5Q8NH56 324 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 MUCL1Q96DR8 90 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 CCT8L2Q96SF2 557 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 FOXC2Q99958 501 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 TMEM204Q9BSN7 226 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 SLC19A3Q9BZV2 496 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 POLR2J2Q9GZM3 115 aaKnown RBP12.06□□□□□ -0.48
SHMT2-219ENST00000555563 POLR2J3Q9H1A7 115 aaKnown RBP12.06□□□□□ -0.48
SHMT2-219ENST00000555563 FKRPQ9H9S5 495 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 NGBQ9NPG2 151 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 ARL8BQ9NVJ2 186 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 ADA2Q9NZK5 511 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 TAGLN3Q9UI15 199 aa12.06□□□□□ -0.48
SHMT2-219ENST00000555563 CELSR1Q9NYQ6 3014 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 LOC102725191A0A1B0GVB3 256 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 ZNF587BE7ETH6 402 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 MS4A18H0YCH9 400 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 PLPP3O14495 311 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 KRT33AO76009 404 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 ZNF432O94892 652 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 CH25HO95992 272 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 SERPINA1P01009 418 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 HLA-DOBP13765 273 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 CD53P19397 219 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 UGT2B15P54855 530 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 SLC25A3Q00325 362 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 BSPH1Q075Z2 132 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 PUDPQ08623 228 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 PMS2P3Q13401 168 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 ACKR1Q16570 336 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 MS4A18Q3C1V0 323 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 NCMAPQ5T1S8 102 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 OR7E24Q6IFN5 339 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 LINGO2Q7L985 606 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 ABHD12BQ7Z5M8 362 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-219ENST00000555563 NKAIN4Q8IVV8 208 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 UEVLDQ8IX04 471 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 TMEM123Q8N131 208 aa12.05□□□□□ -0.48
SHMT2-219ENST00000555563 C17orf78Q8N4C9 275 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms