RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 SLC35B4Q969S0 331 aa11.17□□□□□ -0.62
PTCH1-218ENST00000548945 ALKBH3Q96Q83 286 aaPredicted RBP11.17□□□□□ -0.62
PTCH1-218ENST00000548945 RAB1BQ9H0U4 201 aa11.17□□□□□ -0.62
PTCH1-218ENST00000548945 ZNF442Q9H7R0 627 aa11.17□□□□□ -0.62
PTCH1-218ENST00000548945 CHODLQ9H9P2 273 aa11.17□□□□□ -0.62
PTCH1-218ENST00000548945 THUMPD1Q9NXG2 353 aaKnown RBP11.17□□□□□ -0.62
PTCH1-218ENST00000548945 ZNF232Q9UNY5 417 aa11.17□□□□□ -0.62
PTCH1-218ENST00000548945 RCE1Q9Y256 329 aa11.17□□□□□ -0.62
PTCH1-218ENST00000548945 SDHDO14521 159 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 FZD7O75084 574 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 TGFAP01135 160 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 IL6P05231 212 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 GSNP06396 782 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 ERCC1P07992 297 aaPredicted RBP11.16□□□□□ -0.62
PTCH1-218ENST00000548945 BGNP21810 368 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 NME5P56597 212 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 BNIP2Q12982 314 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 MPP2Q14168 576 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 IQCCQ4KMZ1 466 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 NIPAL3Q6P499 406 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 LINGO2Q7L985 606 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 VRK2Q86Y07 508 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 CCDC36Q8IYA8 594 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 ANKS4BQ8N8V4 417 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 IL17RDQ8NFM7 739 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 PNPT1Q8TCS8 783 aaKnown RBP11.16□□□□□ -0.62
PTCH1-218ENST00000548945 DYDC1Q8WWB3 177 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 NEU4Q8WWR8 484 aaPredicted RBP11.16□□□□□ -0.62
PTCH1-218ENST00000548945 HPS1Q92902 700 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 C3orf49Q96BT1 292 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 ANKRD27Q96NW4 1050 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 SPATA9Q9BWV2 254 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 BPESC1Q9GZL8 116 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 NELFAQ9H3P2 528 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 CACYBPQ9HB71 228 aaKnown RBP11.16□□□□□ -0.62
PTCH1-218ENST00000548945 PNPOQ9NVS9 261 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 ZNF443Q9Y2A4 671 aaPredicted RBP11.16□□□□□ -0.62
PTCH1-218ENST00000548945 IFT52Q9Y366 437 aa11.16□□□□□ -0.62
PTCH1-218ENST00000548945 A0A0G2JPF8 293 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 TRPC5OSA6NMA1 111 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 HNRNPCL2B2RXH8 293 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 HNRNPCL3B7ZW38 293 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 FTCDNL1E5RQL4 147 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 HDAC3O15379 428 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 HNRNPCL1O60812 293 aaKnown RBP11.15□□□□□ -0.62
PTCH1-218ENST00000548945 UPK3AO75631 287 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 ZNF432O94892 652 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 AHSA1O95433 338 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 STAMBPO95630 424 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 C8BP07358 591 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 TACSTD2P09758 323 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 HNRNPCL4P0DMR1 293 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 IDO1P14902 403 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 CBR1P16152 277 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 ZNF43P17038 809 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 NCF2P19878 526 aaPredicted RBP11.15□□□□□ -0.62
PTCH1-218ENST00000548945 NPR2P20594 1047 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 CALCRP30988 508 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 CRATP43155 626 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 DSTNP60981 165 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 ROR2Q01974 943 aaKnown RBP11.15□□□□□ -0.62
PTCH1-218ENST00000548945 GUCY1A3Q02108 690 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 POU3F1Q03052 451 aaPredicted RBP11.15□□□□□ -0.62
PTCH1-218ENST00000548945 LGALS3BPQ08380 585 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 BST1Q10588 318 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 CARTPTQ16568 116 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 HHATQ5VTY9 493 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 LIPNQ5VXI9 398 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 UGT2A3Q6UWM9 527 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 C5orf46Q6UWT4 87 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 MSANTD1Q6ZTZ1 278 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 CLIP4Q8N3C7 705 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 MGARPQ8TDB4 240 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 SLC38A5Q8WUX1 472 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 C12orf10Q9HB07 376 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 PCDHB14Q9Y5E9 798 aa11.15□□□□□ -0.62
PTCH1-218ENST00000548945 A0A096LPE4 126 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 A0A1W2PPZ6 126 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 TMEM247A6NEH6 219 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 hCG_2039718K7EN88 272 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 NR5A2O00482 541 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 RRP9O43818 475 aaKnown RBP11.14□□□□□ -0.63
PTCH1-218ENST00000548945 OR2T1O43869 369 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 SHOX2O60902 331 aaPredicted RBP11.14□□□□□ -0.63
PTCH1-218ENST00000548945 SLC43A1O75387 559 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 SLC22A3O75751 556 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 BCHEP06276 602 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 PNMTP11086 282 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 PRG2P13727 222 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 ETFAP13804 333 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 DAOP14920 347 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 ARR3P36575 388 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 CHN2P52757 468 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 GNGT1P63211 74 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 HGFACQ04756 655 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 CR1LQ2VPA4 569 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 PDCD4Q53EL6 469 aaKnown RBP11.14□□□□□ -0.63
PTCH1-218ENST00000548945 C6orf89Q6UWU4 347 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 IL17RELQ6ZVW7 336 aa11.14□□□□□ -0.63
PTCH1-218ENST00000548945 SERPINA11Q86U17 422 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms