RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TPRX1Q8N7U7 411 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 OR51S1Q8NGJ8 323 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 ARPC1AQ92747 370 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 ITCHQ96J02 903 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 ZIM3Q96PE6 472 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 CNN2Q99439 309 aaKnown RBP2.89□□□□□ -1.95
VPS29-205ENST00000548539 P2RY13Q9BPV8 354 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 C20orf85Q9H1P6 137 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 KLHL28Q9NXS3 571 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 ABCA7Q8IZY2 2146 aa2.89□□□□□ -1.95
VPS29-205ENST00000548539 IGLV3-22A0A075B6J6 115 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 PPIAL4EA0A075B759 164 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 A0A1W2PPV9 198 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 GOLGA8OA6NCC3 632 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 CCDC169A6NNP5 214 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 USP27XA6NNY8 438 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 E9PBE3 544 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 GOLGA8NF8WBI6 632 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 HMMRO75330 724 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 CIB2O75838 187 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 OR7A10O76100 309 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 UBTFL1P0CB47 393 aaPredicted RBP2.88□□□□□ -1.95
VPS29-205ENST00000548539 PPIAL4FP0DN26 164 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 RPS2P15880 293 aaKnown RBP2.88□□□□□ -1.95
VPS29-205ENST00000548539 ABOP16442 354 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 KIR2DS4P43632 304 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 ATP5IP56385 69 aaPredicted RBP2.88□□□□□ -1.95
VPS29-205ENST00000548539 LYZP61626 148 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 PDIA2Q13087 525 aaKnown RBP2.88□□□□□ -1.95
VPS29-205ENST00000548539 PPIL2Q13356 520 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 ORC2Q13416 577 aaPredicted RBP2.88□□□□□ -1.95
VPS29-205ENST00000548539 ATP6AP1Q15904 470 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 C1orf94Q6P1W5 598 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 RFLNAQ6ZTI6 216 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 PSTKQ8IV42 348 aaKnown RBP2.88□□□□□ -1.95
VPS29-205ENST00000548539 CCDC71LQ8N9Z2 235 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 FNDC5Q8NAU1 212 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 TRPV1Q8NER1 839 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 OR2L3Q8NG85 312 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 OR10G3Q8NGC4 313 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 OR56B2PQ8NGI1 322 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 NEIL3Q8TAT5 605 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 SETD7Q8WTS6 366 aaKnown RBP2.88□□□□□ -1.95
VPS29-205ENST00000548539 FRAT1Q92837 279 aaPredicted RBP2.88□□□□□ -1.95
VPS29-205ENST00000548539 IFT74Q96LB3 600 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 MS4A4EQ96PG1 132 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 KCNA7Q96RP8 456 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 RIOK1Q9BRS2 568 aaKnown RBP2.88□□□□□ -1.95
VPS29-205ENST00000548539 PKIBQ9C010 78 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 PLGRKTQ9HBL7 147 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 ZFP14Q9HCL3 533 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 NT5MQ9NPB1 228 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 DCAF16Q9NXF7 216 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 GIN1Q9NXP7 522 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 PEX16Q9Y5Y5 336 aa2.88□□□□□ -1.95
VPS29-205ENST00000548539 CHD4Q14839 1912 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 FRMPD3Q5JV73 1810 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 A0A0U1RQS6 177 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 A0A1W2PPE3 182 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 PSMB11A5LHX3 300 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 ZNF716A6NP11 495 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 A8MUA0 341 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 AGPAT2O15120 278 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 PSTPIP1O43586 416 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 TNFSF13O75888 250 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 C1orf105O95561 183 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 KLF8O95600 359 aaPredicted RBP2.87□□□□□ -1.95
VPS29-205ENST00000548539 HPNP05981 417 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 ZNF735P0CB33 412 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 SLC2A5P22732 501 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 FMO3P31513 532 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 BTCP35070 178 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 GLP1RP43220 463 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 ARRB1P49407 418 aaPredicted RBP2.87□□□□□ -1.95
VPS29-205ENST00000548539 SUCLG1P53597 346 aaKnown RBP2.87□□□□□ -1.95
VPS29-205ENST00000548539 TAS2R19P59542 299 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 GNB2P62879 340 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 ACVR1Q04771 509 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 ZNF77Q15935 545 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 SSX2Q16385 188 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 GPR157Q5UAW9 335 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 RNASEKQ6P5S7 137 aaKnown RBP2.87□□□□□ -1.95
VPS29-205ENST00000548539 ZNF620Q6ZNG0 422 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 LRRC74BQ6ZQY2 392 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 CDR2LQ86X02 465 aaPredicted RBP2.87□□□□□ -1.95
VPS29-205ENST00000548539 RALGPS2Q86X27 583 aaPredicted RBP2.87□□□□□ -1.95
VPS29-205ENST00000548539 MFSD6LQ8IWD5 586 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 PNKDQ8N490 385 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 NKAPP1Q8N9T2 125 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 C20orf203Q8NBC4 194 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 KCNG3Q8TAE7 436 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 SLC2A14Q8TDB8 520 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 PYROXD1Q8WU10 500 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 TMEM101Q96IK0 257 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 IMMP1LQ96LU5 166 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 CCDC77Q9BR77 488 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 HES7Q9BYE0 225 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 GPR61Q9BZJ8 451 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 SLC25A22Q9H936 323 aa2.87□□□□□ -1.95
VPS29-205ENST00000548539 PDFQ9HBH1 243 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms